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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVYFDLGEIDNTTGNWDLYGNDDPNRYNGFQNKFFETFAGAFTKRGLLLKFLVLGGATTIGYLGSTSSPDLLAIKNGPKQ
VPVMGPRGRK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8htu:H 95 90 0.9667 0.9158 0.9667 6.84e-60 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
2 4xk8:H 90 89 0.6111 0.6111 0.6180 8.28e-37 4xk8:h
3 6yez:H 93 87 0.6111 0.5914 0.6322 1.93e-36 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
4 7wfd:AH 95 89 0.5889 0.5579 0.5955 1.77e-35 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
5 5zji:H 95 89 0.6333 0.6000 0.6404 1.91e-22 8bcv:H, 8bcw:H
6 6zzx:H 94 89 0.4111 0.3936 0.4157 1.15e-21 6zzy:H
7 8wgh:H 90 89 0.6000 0.6000 0.6067 5.97e-20
8 6igz:H 88 87 0.3889 0.3977 0.4023 1.33e-13
9 6sl5:H 92 79 0.3556 0.3478 0.4051 7.40e-13
10 7d0j:H 100 80 0.3444 0.3100 0.3875 2.94e-12 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
11 7yca:H 96 90 0.4000 0.3750 0.4000 8.41e-11
12 5vb9:A 108 18 0.1000 0.0833 0.5000 0.79 7ama:A, 7ama:B, 7amg:A, 7amg:B, 7amg:C, 7amg:D, 8cdg:A, 8cdg:B, 8dyf:A, 8dyf:B, 8dyg:A, 8dyg:B, 8dyh:A, 8dyh:B, 8dyi:A, 8dyi:B, 5hhv:A, 5hhx:A, 5hi3:A, 5hi3:B, 5hi4:A, 5hi4:B, 5hi5:A, 5hi5:B, 8usr:A, 8usr:B, 8usr:D, 5vb9:B
13 5t04:A 458 41 0.1333 0.0262 0.2927 1.3 4grv:A
14 5jov:A 949 65 0.1889 0.0179 0.2615 2.5
15 8azw:u 191 21 0.1222 0.0576 0.5238 3.2 8b2l:u3, 7qiw:K, 7qiz:K
16 8uss:A 107 18 0.0889 0.0748 0.4444 3.4
17 7ay3:A 124 76 0.2778 0.2016 0.3289 3.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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