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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVG
AAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3abk:Q 144 143 1.0000 0.9931 1.0000 1.74e-104 3abm:Q, 5b1b:Q, 7coh:D, 7coh:Q, 7cp5:D, 7cp5:Q, 7d5w:D, 7d5w:Q, 7d5x:D, 7d5x:Q, 2dys:D, 2ein:Q, 8gbt:Q, 8gcq:D, 8gcq:Q, 8h8r:D, 8h8r:Q, 8h8s:D, 8h8s:Q, 6juw:D, 6juw:Q, 6nkn:Q, 6nmf:Q, 6nmp:Q, 7tih:D, 7tih:Q, 7vuw:Q, 5w97:d, 7y44:D, 7y44:Q, 2y69:Q, 7ypy:D, 7ypy:Q
2 1rdf:A 263 43 0.0979 0.0532 0.3256 2.7 1fez:A, 1fez:B, 1fez:C, 1fez:D, 2iof:A, 2iof:K, 2ioh:A, 2ioh:B, 2ioh:C, 2ioh:D, 1rdf:B, 1rdf:C, 1rdf:D, 1rdf:E, 1rdf:F, 1rql:A, 1rql:B, 1rqn:A, 1rqn:B, 1swv:A, 1swv:B, 1sww:A, 1sww:B
3 5b7j:A 111 34 0.0839 0.1081 0.3529 2.9
4 8sam:A 859 24 0.0839 0.0140 0.5000 6.7 8sam:B, 8sao:B, 8sao:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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