Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVVEEHGQLSISNGELVNERGEQVQLKGMSSHGLQWYGQFVNYESMKWLRDDWGINVFRAAMYTSSGGYIDDPSVKEKVK
EAVEAAIDLDIYVIIDWHILSDNDPNIYKEEAKDFFDEMSELYGDYPNVIYEIANEPNGSDVTWGNQIKPYAEEVIPIIR
NNDPNNIIIVGTGTWSQDVHHAADNQLADPNVMYAFHFYAGTHGQNLRDQVDYALDQGAAIFVSEWGTSAATGDGGVFLD
EAQVWIDFMDERNLSWANWSLTHKDESSAALMPGANPTGGWTEAELSPSGTFVREKIRESA

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1e5j:A 302 301 1.0000 0.9967 1.0000 0.0 2a3h:A, 3a3h:A, 4a3h:A, 5a3h:A, 6a3h:A, 8a3h:A, 1h11:A, 1h2j:A, 1h5v:A, 1hf6:A, 1ocq:A, 1qhz:A, 1qi0:A, 1qi2:A, 2v38:A, 1w3k:A, 1w3l:A
2 3pzt:B 296 295 0.6844 0.6959 0.6983 5.07e-154 3pzt:A
3 4xzw:A 305 301 0.5914 0.5836 0.5914 6.70e-128
4 5ecu:A 350 317 0.4551 0.3914 0.4322 9.13e-82
5 1g0c:A 358 339 0.4751 0.3994 0.4218 2.44e-79
6 8bqa:AAA 298 289 0.4319 0.4362 0.4498 8.86e-79
7 5i2u:B 297 303 0.4319 0.4377 0.4290 1.64e-76 5i2u:A
8 8c10:A 297 294 0.4252 0.4310 0.4354 8.46e-74
9 2cks:B 306 305 0.3953 0.3889 0.3902 2.78e-71 2ckr:B, 2ckr:A, 2cks:A
10 1egz:A 291 237 0.3721 0.3849 0.4726 4.85e-67 1egz:B, 1egz:C
11 1tvp:B 291 264 0.3688 0.3814 0.4205 1.76e-59
12 6ujf:A 301 240 0.1993 0.1993 0.2500 1.72e-14
13 8bqb:A 331 231 0.2159 0.1964 0.2814 1.10e-12 8bqb:B, 8bqb:C
14 1wky:A 446 261 0.2326 0.1570 0.2682 2.29e-12
15 4hu0:A 330 286 0.2326 0.2121 0.2448 2.37e-12
16 5a8m:A 337 244 0.1860 0.1662 0.2295 3.87e-10 5a8m:B, 5a8m:C, 5a8n:A, 5a8o:A, 5a8p:A, 5a8q:A, 5a94:A, 5a94:B, 5a94:C, 5a94:D, 5a94:E, 5a94:F, 5a95:A, 5a95:B, 5a95:C
17 2whl:A 294 262 0.2226 0.2279 0.2557 3.75e-09
18 3amg:B 291 207 0.1728 0.1787 0.2512 3.97e-09
19 3nco:A 313 133 0.1229 0.1182 0.2782 5.95e-09 3nco:B, 3rjy:A
20 7vt5:A 311 247 0.1993 0.1929 0.2429 1.93e-08 7vt6:A, 7vt7:A
21 3amg:A 311 221 0.1894 0.1833 0.2579 1.48e-07 3aof:B, 3aof:A, 3azr:A, 3azr:B, 3azs:A, 3azs:B, 3azt:A, 3azt:D, 3mmw:A, 3mmw:B, 3mmw:C, 3mmw:D
22 4u5k:A 304 152 0.1329 0.1316 0.2632 2.47e-06 4u5i:A, 4u5i:B, 4u5k:B
23 4w88:B 340 144 0.1262 0.1118 0.2639 0.004 4w86:A, 4w86:B, 4w87:A, 4w87:B, 4w88:A, 4w89:A, 4w89:B
24 4v2x:A 534 157 0.1229 0.0693 0.2357 0.013
25 8oz1:A 373 143 0.1163 0.0938 0.2448 0.041 6ha9:A, 6ha9:B, 6haa:A, 6haa:B, 5oyd:A, 5oyd:B, 5oye:A, 5oye:B
26 4w7v:A 313 171 0.1395 0.1342 0.2456 0.045 4w7w:A
27 2man:A 298 230 0.1694 0.1711 0.2217 0.047 3man:A
28 4ail:C 750 116 0.1130 0.0453 0.2931 0.096 2jgu:A
29 5g56:A 707 177 0.1429 0.0608 0.2429 0.46 5la0:A, 5la1:A, 5la2:A, 5la2:B, 2y8k:A
30 3axx:B 379 95 0.0930 0.0739 0.2947 0.68 3axx:A, 3axx:C, 3qhm:A, 3qhm:B, 3qhm:C, 3qhn:A, 3qhn:B, 3qhn:C, 3qho:A, 3qho:B, 3qho:C, 3vvg:A, 3vvg:C, 2zum:A, 2zun:A, 2zun:B, 2zun:C
31 7wi7:A 565 133 0.1063 0.0566 0.2406 0.90
32 8cbl:E 692 80 0.0831 0.0361 0.3125 1.4
33 3ndz:A 345 155 0.1262 0.1101 0.2452 1.5 3ndz:C, 3ndz:B, 3ndz:D
34 1ynp:B 298 70 0.0698 0.0705 0.3000 1.8 1ynp:A, 1ynq:A, 1ynq:B
35 4yzt:A 512 141 0.1030 0.0605 0.2199 2.3
36 4flu:A 758 116 0.1030 0.0409 0.2672 2.9 4flt:A, 4flv:A, 4flw:A, 4flx:A, 4fly:A, 4flz:A, 4fm0:A, 4fm1:A, 4fm2:A
37 3viu:A 703 52 0.0498 0.0213 0.2885 3.1
38 2qby:A 366 59 0.0631 0.0519 0.3220 7.8
39 3zmr:A 469 39 0.0532 0.0341 0.4103 7.8 3zmr:B
40 3pzi:A 357 50 0.0498 0.0420 0.3000 8.2 3pzo:A, 3pzq:A
41 4rk5:A 275 93 0.0831 0.0909 0.2688 9.1 4rk4:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218