Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVSSVPTKLEVVAATPTSLLISWDAPAVTVVHYVITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYTMYYSY
SDLYSYSSPISINYRT

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5a43:C 96 96 1.0000 1.0000 1.0000 3.57e-63
2 8f0m:B 91 93 0.8333 0.8791 0.8602 1.63e-48
3 5v7p:D 95 96 0.8438 0.8526 0.8438 4.28e-47
4 4lxo:A 184 96 0.8021 0.4185 0.8021 2.06e-45 4lxo:B
5 3ch8:A 190 96 0.7917 0.4000 0.7917 2.45e-42 2qbw:A
6 5mtm:B 92 95 0.7812 0.8152 0.7895 6.17e-42
7 6ux8:B 86 92 0.7604 0.8488 0.7935 1.31e-41
8 6d0j:C 90 94 0.7604 0.8111 0.7766 2.32e-41 6d0k:C, 6d0n:C
9 7l0f:H 94 95 0.7708 0.7872 0.7789 3.95e-41 7l0f:F, 7l0f:B, 7l0f:M, 7l0g:C, 7l0g:D, 7l0g:F, 7l0g:H
10 8vxu:E 90 96 0.7604 0.8111 0.7604 5.05e-39 7szt:F, 8tgy:C, 8tgy:D, 6wk9:C, 6wk9:G
11 3csb:A 464 98 0.8021 0.1659 0.7857 1.20e-38
12 4jmh:A 200 93 0.7292 0.3500 0.7527 3.40e-37 4jmg:A
13 2mnu:A 93 77 0.2917 0.3011 0.3636 1.69e-04
14 6gvk:A 201 78 0.2708 0.1294 0.3333 0.001 6gvl:A
15 6gvk:A 201 79 0.2083 0.0995 0.2532 1.0 6gvl:A
16 6x39:A 100 80 0.2917 0.2800 0.3500 0.006
17 5gmj:B 224 83 0.2500 0.1071 0.2892 0.38 5gmi:A, 5gmi:B, 5gmj:A, 5h3j:A
18 2bht:A 294 43 0.1667 0.0544 0.3721 0.55 2bhs:A, 2bhs:B, 2bhs:C, 2bhs:D, 2bht:B, 2bht:C, 2bht:D, 2jc3:A, 2jc3:H, 2jc3:B, 2jc3:C, 2jc3:D, 2jc3:E, 2jc3:F, 2jc3:G, 2v03:A
19 3hbg:A 353 47 0.1667 0.0453 0.3404 1.5
20 2adc:A 208 19 0.1042 0.0481 0.5263 2.5
21 3mdj:C 819 70 0.1875 0.0220 0.2571 2.7 3mdj:A
22 8aaf:q 191 42 0.1667 0.0838 0.3810 3.4 8agt:q, 8agu:q, 8agv:q, 8agw:q, 8agx:q, 8agz:q, 5apn:H, 5apo:H, 7azy:e, 7b7d:LK, 8bip:LH, 8bjq:LH, 8bn3:L9, 8bqd:AD, 8bqx:AD, 7bt6:H, 7btb:H, 8ccs:LL, 8cdl:LL, 8cdr:LL, 8ceh:LL, 8cf5:LL, 8cg8:LL, 8cgn:LL, 8civ:LL, 8cku:LL, 8cmj:LL, 5dat:L9, 5dat:l9, 5dc3:L9, 5dc3:l9, 5dge:L9, 5dge:l9, 5dgf:L9, 5dgf:l9, 5dgv:L9, 5dgv:l9, 6elz:H, 6em1:H, 6em5:H, 8eub:AH, 8evp:AH, 8evq:AH, 8evr:AH, 8evs:AH, 8evt:AH, 8ewb:AH, 8ewc:AH, 5fci:L9, 5fci:l9, 5fcj:L9, 5fcj:l9, 6ft6:H, 5gak:L, 6gq1:H, 6gqb:H, 6gqv:H, 5h4p:H, 6hd7:L, 8hfr:Ib, 6hhq:q, 6hhq:CK, 5i4l:L9, 5i4l:l9, 6i7o:AD, 6i7o:XD, 3j16:F, 3j6x:L9, 3j6y:L9, 3j77:L9, 3j78:L9, 3jct:H, 5jcs:H, 5juo:M, 5jup:M, 5jus:M, 5jut:M, 5juu:M, 8k2d:LH, 8k82:LH, 5lyb:L9, 5lyb:l9, 5m1j:H5, 6m62:H, 5mc6:AD, 5mei:q, 5mei:CK, 7mpi:AH, 7mpj:AH, 6n8j:H, 6n8k:H, 6n8l:H, 6n8m:K, 6n8n:K, 6n8o:K, 7n8b:AH, 7nac:H, 5ndg:L9, 5ndg:l9, 5ndv:L9, 5ndv:l9, 5ndw:L9, 5ndw:l9, 7nrc:LK, 7nrd:LK, 5obm:L9, 5obm:l9, 7of1:H, 7oh3:H, 7ohp:H, 7ohq:H, 7ohr:H, 7oht:H, 7ohu:H, 7ohv:H, 7ohw:H, 7ohy:H, 6oig:H, 5on6:q, 5on6:CK, 7osa:uL6, 7osm:uL6, 8p8m:LM, 8p8n:LM, 8p8u:LM, 8pfr:LM, 6q8y:AD, 6qik:F, 6qt0:F, 6qtz:F, 7r7a:H, 6r84:7, 6r86:7, 6r87:7, 6ri5:F, 7rr5:LH, 6rzz:F, 6s05:F, 6s47:AK, 6snt:o, 6sv4:AD, 6sv4:XD, 6sv4:zD, 6t4q:LH, 5t62:K, 5t6r:K, 6t7i:LH, 6t7t:LH, 6t83:Hy, 6t83:Ka, 5tbw:q, 5tbw:CK, 6tb3:AD, 5tga:L9, 5tga:l9, 5tgm:L9, 5tgm:l9, 6tnu:AD, 7too:AL09, 7top:AL09, 7u0h:H, 4u3m:L9, 4u3m:l9, 4u3n:L9, 4u3n:l9, 4u3u:L9, 4u3u:l9, 4u4n:L9, 4u4n:l9, 4u4o:L9, 4u4o:l9, 4u4q:L9, 4u4q:l9, 4u4r:L9, 4u4r:l9, 4u4u:L9, 4u4u:l9, 4u4y:L9, 4u4y:l9, 4u4z:L9, 4u4z:l9, 4u50:L9, 4u50:l9, 4u51:L9, 4u51:l9, 4u52:L9, 4u52:l9, 4u53:L9, 4u53:l9, 4u55:L9, 4u55:l9, 4u56:L9, 4u56:l9, 4u6f:L9, 4u6f:l9, 7ug6:H, 7uoo:H, 7uqb:H, 7uqz:H, 7v08:H, 4v4b:BH, 4v6i:BF, 4v7h:BH, 4v7r:BI, 4v7r:DI, 4v88:BH, 4v88:DH, 4v8t:H, 4v8y:BH, 4v8z:BH, 8v83:H, 8v84:H, 8v87:H, 4v91:H, 6woo:H, 6xiq:H, 6xir:H, 8y0u:LH, 6ylg:H, 6ylh:H, 6ylx:H, 6yly:H, 5z3g:L, 7z34:H, 6z6j:LH, 6z6k:LH, 7zpq:BH, 7zrs:BH, 7zs5:BJ, 7zuw:BH, 7zux:EH, 7zw0:LL
23 4xyj:A 768 36 0.1354 0.0169 0.3611 3.4 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
24 6s6z:A 1083 47 0.1250 0.0111 0.2553 3.7 6s6z:D, 6s6z:B, 6s6z:H, 6s6z:F, 6s6z:G, 6s6z:E, 6s6z:C, 6sd0:A, 6sd0:B, 6sd0:C, 6sd0:D
25 3poa:A 96 44 0.1354 0.1354 0.2955 3.7
26 7ohs:H 156 42 0.1667 0.1026 0.3810 4.5
27 4ax3:D 457 45 0.1458 0.0306 0.3111 7.7 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
28 6hiv:DA 1557 14 0.0833 0.0051 0.5714 9.6 6hiw:DA, 7pub:DA

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218