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BioLiP
>protein
SVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSANGKVSFWTIH

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3g73:B 95 78 0.9750 0.8211 1.0000 5.67e-56 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
2 6ako:C 97 78 0.4750 0.3918 0.4872 3.44e-21 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
3 7vov:A 93 79 0.4500 0.3871 0.4557 2.67e-20 7vou:C, 7vov:B
4 8vfy:O 102 79 0.4625 0.3627 0.4684 3.20e-20 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
5 2hdc:A 97 78 0.4625 0.3814 0.4744 3.24e-20
6 6ncm:A 91 75 0.4625 0.4066 0.4933 4.82e-20 6nce:A, 6ncm:B
7 7yze:A 87 79 0.4500 0.4138 0.4557 4.90e-20 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
8 7cby:C 100 79 0.4625 0.3700 0.4684 1.08e-18
9 8bzm:E 95 78 0.4500 0.3789 0.4615 2.43e-18 8bzm:I, 8bzm:A, 8bzm:J
10 7yza:A 122 80 0.4375 0.2869 0.4375 5.01e-18 7yz7:A, 7yzc:A, 7yzd:A
11 2a07:J 83 75 0.4125 0.3976 0.4400 8.58e-18 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
12 3co6:C 91 77 0.4500 0.3956 0.4675 1.24e-17 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
13 2c6y:A 98 78 0.4625 0.3776 0.4744 2.71e-17 2c6y:B
14 2uzk:A 97 77 0.4625 0.3814 0.4805 5.54e-17 2uzk:C
15 3l2c:A 85 77 0.4500 0.4235 0.4675 1.93e-16
16 3qrf:G 82 75 0.4250 0.4146 0.4533 3.67e-16 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
17 7tdw:A 90 75 0.4250 0.3778 0.4533 5.53e-16 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
18 7yzg:A 121 79 0.4125 0.2727 0.4177 5.34e-14
19 6el8:A 89 76 0.3625 0.3258 0.3816 7.79e-14 6el8:D
20 7yzb:A 125 80 0.3500 0.2240 0.3500 6.01e-13
21 7zlt:C 415 37 0.1875 0.0361 0.4054 0.011 3ivy:A, 3iw0:A, 3iw1:A, 3iw2:A, 7qke:A, 7qnn:A, 7qwn:A, 7qwn:B, 7qwn:C, 7r1i:A, 7r1i:B, 7r1i:C, 7r3u:A, 7r3u:B, 7r3u:C, 2x5l:A, 2x5w:A, 2xc3:A, 2xn8:A, 7yxf:A, 7yxf:B, 7yxf:C, 7zgl:A, 7zgl:B, 7zgl:C, 7zic:A, 7zic:B, 7zic:C, 7zlt:A, 7zlt:B, 7zlz:A, 7zlz:B, 7zlz:C, 7zqr:A, 7zqr:B, 7zqr:C, 7zsu:A, 7zsu:B, 7zsu:C, 7zt0:A, 7zt0:B, 7zxd:A, 7zxd:B, 7zxd:C
22 4pj3:A 1335 58 0.2250 0.0135 0.3103 1.2 7a5p:U, 6icz:Q, 6id1:Q, 7w59:Q, 7w5a:Q, 7w5b:Q, 5xjc:Q
23 6btg:A 207 29 0.1625 0.0628 0.4483 2.7 6btd:A
24 8uat:F 351 23 0.1125 0.0256 0.3913 3.5 3hf3:A, 3hf3:B, 3hf3:C, 3hf3:D, 3hgj:A, 3hgj:B, 3hgj:C, 3hgj:D, 5nux:A, 5nux:B, 5nux:C, 5nux:D, 5ogt:A, 5ogt:B, 5ogt:C, 5ogt:D, 8uaj:A, 8uaj:B, 8uaj:C, 8uaj:D, 8uat:B, 8uat:C, 8uat:D, 8uat:E, 8uat:G, 8uat:H, 8uat:A
25 8j4q:D 724 26 0.1500 0.0166 0.4615 4.3 8j4q:A, 8j4q:B, 8j4q:C, 8j4r:A, 8j4r:B, 8j4r:C, 8j4r:D, 6lfk:A, 6lfk:B, 6lfk:C, 6lfk:D
26 4nea:A 505 36 0.1625 0.0257 0.3611 4.4 5dib:A, 5dib:B, 5dib:C, 5dib:D, 5eyu:A, 5eyu:B, 5eyu:C, 5eyu:D, 5ez4:A, 5ez4:B, 5ez4:C, 5ez4:D, 4mpy:A, 4mpy:B, 4mpy:C, 4mpy:D, 4mpy:E, 4mpy:F, 4mpy:G, 4mpy:H, 4nea:B, 4nea:C, 4nea:D, 4qn2:A, 4qn2:B, 4qn2:C, 4qn2:D, 4qn2:E, 4qn2:F, 4qn2:G, 4qn2:H, 4zwl:A, 4zwl:B, 4zwl:C, 4zwl:D, 4zwl:E, 4zwl:F, 4zwl:G, 4zwl:H, 4zxu:A, 4zxu:B, 4zxu:C, 4zxu:D, 4zxu:E, 4zxu:F, 4zxu:G, 4zxu:H
27 6kjj:A 361 29 0.1375 0.0305 0.3793 9.2 6kjp:A, 6kjq:A, 6kjr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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