Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGP
DRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLD
LSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRK

The query sequence (length=222) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wnr:B 222 222 1.0000 1.0000 1.0000 4.04e-159 2wnr:D, 2wnr:F
2 2pnz:A 236 219 0.6441 0.6059 0.6530 1.43e-103 2po0:A, 2po1:A, 2po2:A
3 3m7n:E 248 222 0.5721 0.5121 0.5721 5.28e-88 3m7n:F, 3m7n:D, 3m85:F, 3m85:D, 3m85:E
4 2c39:D 248 219 0.5135 0.4597 0.5205 1.79e-83 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
5 6d6q:B 241 222 0.4054 0.3734 0.4054 1.74e-52 6d6r:B
6 6fsz:BB 244 226 0.3153 0.2869 0.3097 2.23e-31 4ifd:B, 5jea:B, 5k36:B, 8qcf:C
7 1r6m:A 236 239 0.3378 0.3178 0.3138 4.38e-25
8 6d6q:F 252 213 0.3468 0.3056 0.3615 7.21e-23 6d6r:F
9 3dd6:A 244 238 0.3108 0.2828 0.2899 9.76e-21
10 4aim:A 698 224 0.3468 0.1103 0.3438 8.45e-20 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
11 4aim:A 698 175 0.2072 0.0659 0.2629 0.003 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
12 7ogk:A 695 232 0.3423 0.1094 0.3276 1.57e-16 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
13 7ogk:A 695 98 0.1441 0.0460 0.3265 0.019 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
14 5yjj:A 442 222 0.3378 0.1697 0.3378 4.92e-16 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
15 7ld5:A 587 241 0.3333 0.1261 0.3071 7.37e-15 7ld5:B, 7ld5:C
16 3gme:A 482 230 0.3243 0.1494 0.3130 7.90e-15
17 3gme:A 482 167 0.1757 0.0809 0.2335 0.007
18 8wx0:A 597 245 0.3378 0.1256 0.3061 1.26e-14 8wx0:B, 8wx0:C
19 1e3p:A 645 235 0.3198 0.1101 0.3021 5.54e-13
20 3m85:I 259 240 0.2703 0.2317 0.2500 3.90e-12 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
21 4ba2:A 274 250 0.2568 0.2080 0.2280 3.12e-08 2c37:I, 2c37:U, 2c38:G, 2c38:I, 2c38:U, 2c38:W, 2jea:A
22 2pnz:B 267 119 0.1532 0.1273 0.2857 3.75e-08
23 6d6q:C 265 104 0.1126 0.0943 0.2404 0.002 6d6r:C
24 6czp:A 219 64 0.1081 0.1096 0.3750 0.23 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
25 5dii:C 199 66 0.1036 0.1156 0.3485 1.1 5dii:A, 5dii:B, 5dii:D, 5dii:E, 5dii:F
26 7aaw:A 315 80 0.0946 0.0667 0.2625 1.9 7aaw:B
27 7nm8:AAA 251 91 0.1171 0.1036 0.2857 2.6
28 5la4:A 508 112 0.1081 0.0472 0.2143 3.5 8b0b:AAA, 8b0b:BBB, 8b0c:AAA, 8b0c:BBB, 8bac:AAA, 8bac:BBB, 8cqi:A, 8cqi:B, 8e07:A, 8e07:B, 8e08:A, 8e08:B, 5e8m:A, 5e97:A, 5e97:B, 5e98:A, 5e98:B, 5e9b:A, 5e9b:B, 5e9c:A, 5e9c:B, 8jyg:A, 8jyg:B, 5l9y:A, 5l9y:B, 5l9z:A, 5l9z:B, 5la7:A, 8ohq:AAA, 8ohq:BBB, 8ohr:AAA, 8ohr:BBB, 7pr7:A, 7pr7:B, 7pr8:A, 7pr8:B, 7prt:A, 7prt:B, 7yi7:A, 7yi7:B, 7yjc:A, 7yjc:B, 6zdm:AAA, 6zdm:BBB
29 4oo1:E 255 29 0.0541 0.0471 0.4138 4.1
30 7w7g:B 1711 38 0.0721 0.0094 0.4211 5.2
31 1d1g:A 164 66 0.0946 0.1280 0.3182 5.4 1d1g:B
32 3el3:A 417 37 0.0631 0.0336 0.3784 6.1 3el3:B
33 3dbg:A 379 37 0.0631 0.0369 0.3784 6.3 3dbg:B
34 7smg:B 144 36 0.0541 0.0833 0.3333 6.5 7smg:A, 7smg:C, 7smg:D
35 4akt:A 330 47 0.0856 0.0576 0.4043 6.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218