Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SVRDEFDAWAARDKGMEDRHWHTAKHALARMPVEEGDTVVDLGTGSGYALRALRDTKGIGRGFGLDGSPEMVQNARAYTD
TDDLSFLVGDFDDLPFDDDSVDHVWSMEAFYYAADPHHTLEEIARILKPGGTFYCAVNYYEENVHSHEWQEHISIDMTRW
SHAEYREAFRDAGLHVAEQDSIADLDIDIPAATEFPTDDWETREAMVERYRTFGTLLTVGVAPHHHHH

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f5z:B 228 228 1.0000 1.0000 1.0000 2.10e-170 6f5z:A
2 3bus:A 251 133 0.1974 0.1793 0.3383 1.78e-12 3bus:B
3 6uv6:C 264 166 0.2325 0.2008 0.3193 3.13e-11 6uv6:A, 6uv6:B
4 2glu:A 234 119 0.1535 0.1496 0.2941 1.03e-09 2glu:B
5 3dh0:B 190 108 0.1404 0.1684 0.2963 6.21e-09 3dh0:A
6 6uak:A 297 126 0.1535 0.1178 0.2778 7.80e-09
7 4pne:B 272 153 0.1711 0.1434 0.2549 7.34e-08 4pne:A
8 1ve3:B 226 102 0.1404 0.1416 0.3137 3.16e-07 1ve3:A
9 7qcb:A 240 117 0.1491 0.1417 0.2906 3.75e-07
10 1p91:A 268 132 0.1711 0.1455 0.2955 8.69e-07 1p91:B
11 5gm2:B 282 186 0.2193 0.1773 0.2688 1.59e-06 5gm1:A, 5gm1:B, 5gm1:C, 5gm1:D, 5gm1:E, 5gm1:F, 5gm1:G, 5gm1:H, 5gm1:I, 5gm1:J, 5gm1:K, 5gm1:L, 5gm1:M, 5gm1:N, 5gm1:O, 5gm1:P, 5gm1:Q, 5gm1:R, 5gm2:A, 5gm2:C, 5gm2:D, 5gm2:E, 5gm2:F, 5gm2:G, 5gm2:H, 5gm2:I, 5gm2:J, 5gm2:L, 5gm2:M, 5gm2:N, 5gm2:O, 5gm2:P, 5gm2:Q, 5gm2:R
12 3t7s:A 246 104 0.1535 0.1423 0.3365 7.23e-06 3t7s:B, 3t7s:C, 3t7s:D, 3t7t:A, 3t7t:B, 3t7t:C, 3t7t:D
13 4krh:A 430 197 0.2018 0.1070 0.2335 8.85e-06 4krh:B, 4kri:A, 4kri:B, 4kri:C
14 5fcd:A 228 111 0.1316 0.1316 0.2703 1.10e-05 5fcd:B
15 3dlc:A 219 141 0.1623 0.1689 0.2624 1.92e-05
16 1ri1:A 252 125 0.1711 0.1548 0.3120 3.72e-05 2hv9:A, 1ri2:A, 1ri3:A, 1ri4:A, 1z3c:A
17 2gs9:A 211 102 0.1184 0.1280 0.2647 5.33e-05 2gs9:B
18 5gm2:K 267 116 0.1535 0.1311 0.3017 7.57e-05
19 1wzn:A 244 102 0.1404 0.1311 0.3137 1.32e-04 1wzn:B, 1wzn:C
20 3sxj:A 245 97 0.1228 0.1143 0.2887 1.51e-04 3sxj:B, 3t0i:A, 3t0i:B
21 3kkz:A 256 110 0.1491 0.1328 0.3091 1.71e-04 3kkz:B
22 3e23:A 198 146 0.1711 0.1970 0.2671 1.89e-04
23 4ine:A 431 99 0.1316 0.0696 0.3030 2.28e-04 4ine:B
24 6cx6:B 333 186 0.2061 0.1411 0.2527 3.81e-04 6cx6:A, 5eg5:A, 4fr0:A, 4fsd:A, 4kw7:A, 4rsr:A
25 9fcx:A 214 106 0.1447 0.1542 0.3113 3.91e-04 9fcd:A, 9fcl:A, 9fcq:A, 9fcs:A, 9fcs:B, 9fcu:A, 9fcu:B, 9fcu:C, 9fcu:D, 9fcx:B, 9fcy:A, 9fcy:B, 9fcy:C, 9fcy:D, 9fd3:A, 9g0k:A, 9g0k:B
26 5bp7:A 249 118 0.1491 0.1365 0.2881 4.60e-04 5bp7:B, 5bp7:C
27 7wzg:B 243 106 0.1535 0.1440 0.3302 5.67e-04 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
28 4f86:A 275 196 0.2237 0.1855 0.2602 6.15e-04 4f84:A, 4f86:B, 4f86:C, 4f86:E, 4f86:F, 4f86:H, 4f86:I, 4f86:J, 4f86:K, 4f86:L
29 5wp5:A 463 121 0.1447 0.0713 0.2727 0.001 5wp5:B
30 7v6h:A 267 108 0.1184 0.1011 0.2500 0.002 7v6h:B
31 6sch:C 355 115 0.1404 0.0901 0.2783 0.002 2b83:A, 2b83:B, 2b83:C, 2b83:D, 1jqb:A, 1jqb:B, 1jqb:C, 1jqb:D, 1kev:A, 1kev:B, 1kev:C, 1kev:D, 1ped:A, 1ped:B, 1ped:C, 1ped:D, 6sch:A, 6sch:B, 6sch:D
32 2yqz:A 261 150 0.1798 0.1571 0.2733 0.003 2yqz:B
33 5wp4:A 485 138 0.1491 0.0701 0.2464 0.003
34 3e8s:A 220 72 0.1228 0.1273 0.3889 0.004
35 5f8f:B 361 120 0.1579 0.0997 0.3000 0.007 5f8e:A, 5f8e:B, 5f8f:A, 5f8f:C
36 5mgz:A 230 105 0.1491 0.1478 0.3238 0.008 5mgz:B
37 5epe:A 248 118 0.1447 0.1331 0.2797 0.008
38 7pd7:B 250 94 0.1140 0.1040 0.2766 0.011 7pd7:A, 7pd7:C, 7pd7:D
39 3uj7:A 259 120 0.1184 0.1042 0.2250 0.011 4fgz:A, 4fgz:B, 4r6w:A, 4r6w:B, 4r6x:A, 4r6x:B, 3uj6:A, 3uj7:B, 3uj8:A, 3uj9:A, 3uja:A, 3ujb:A, 3ujb:B, 3ujc:A, 3ujd:A
40 6zxv:A 325 127 0.1579 0.1108 0.2835 0.016 6zxv:B, 6zxw:G
41 3vc1:D 288 144 0.1754 0.1389 0.2778 0.020 4f86:D, 4f86:G, 3vc1:A, 3vc1:B, 3vc1:C, 3vc1:E, 3vc1:F, 3vc1:G, 3vc1:H, 3vc1:I, 3vc1:J, 3vc1:K, 3vc1:L, 3vc2:A, 3vc2:B, 3vc2:C, 3vc2:D, 3vc2:E, 3vc2:F, 3vc2:G, 3vc2:H, 3vc2:I, 3vc2:J, 3vc2:K, 3vc2:L
42 3cjt:A 254 78 0.1272 0.1142 0.3718 0.027 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
43 7wzf:A 243 155 0.1623 0.1523 0.2387 0.033
44 5m58:A 230 106 0.1447 0.1435 0.3113 0.033 5m58:B
45 4df3:A 230 72 0.0965 0.0957 0.3056 0.040 4df3:B
46 2p35:A 245 59 0.0833 0.0776 0.3220 0.067 2p35:B
47 3i9f:B 169 94 0.1009 0.1361 0.2447 0.10 3i9f:A
48 5bxy:A 155 59 0.1053 0.1548 0.4068 0.12 5bxy:B
49 4kdr:A 208 111 0.1184 0.1298 0.2432 0.13 5dpm:A
50 3r0q:G 353 106 0.1316 0.0850 0.2830 0.15 3r0q:C, 3r0q:A, 3r0q:E
51 5je1:A 244 172 0.1886 0.1762 0.2500 0.25 5jdy:A, 5jdy:B, 5jdz:A, 5jdz:B, 5je0:A, 5je0:B, 5je1:B, 5je2:A, 5je2:B, 5je3:A, 5je3:B, 5je4:A, 5je4:B, 5je5:A
52 4obw:D 235 173 0.1842 0.1787 0.2428 0.29 4obw:A, 4obw:C, 4obw:B
53 1r18:A 223 61 0.0877 0.0897 0.3279 0.32
54 4dzh:A 439 75 0.1009 0.0524 0.3067 0.33
55 5w7m:A 273 31 0.0570 0.0476 0.4194 0.39
56 3ftf:A 246 66 0.0833 0.0772 0.2879 0.41 3fte:A, 3r9x:B
57 2bwj:B 195 120 0.1360 0.1590 0.2583 0.64
58 2zfu:A 212 50 0.0789 0.0849 0.3600 0.78 2zfu:B
59 6kji:A 351 54 0.0702 0.0456 0.2963 0.84 6kji:B, 6kji:C
60 8joz:A 257 118 0.1272 0.1128 0.2458 1.3 4htf:A, 4htf:B
61 2b3t:A 276 53 0.0789 0.0652 0.3396 1.3 1t43:A
62 3eey:A 195 59 0.0965 0.1128 0.3729 1.4 3eey:B, 3eey:C, 3eey:D, 3eey:E, 3eey:F, 3eey:H, 3eey:I, 3eey:J
63 1fp1:D 340 122 0.1404 0.0941 0.2623 1.6 1fpq:A
64 7qos:A 352 158 0.1360 0.0881 0.1962 1.7 7qos:B
65 1i1n:A 224 107 0.1140 0.1161 0.2430 3.1 1kr5:A
66 5gja:A 299 55 0.0746 0.0569 0.3091 3.2 5gj9:A, 5gj9:B, 5gja:B, 5gja:C, 5gja:D, 5gja:E, 5gja:F, 5gja:G, 5gja:H
67 3mb5:A 255 140 0.1447 0.1294 0.2357 4.0 3lga:A, 3lga:B, 3lga:C, 3lga:D, 3lhd:C, 3lhd:A, 3lhd:B, 3lhd:D
68 5axm:B 239 30 0.0658 0.0628 0.5000 4.0 5axl:A, 5axl:B, 5axm:A, 5axn:A, 5axn:B
69 4dcm:A 360 59 0.0702 0.0444 0.2712 5.6
70 6pog:B 236 33 0.0439 0.0424 0.3030 6.0
71 6dcb:A 225 72 0.0921 0.0933 0.2917 7.6 6dcc:A, 5una:C, 5una:A, 5una:B, 5una:D, 5una:E, 5una:F
72 4krg:A 466 89 0.1053 0.0515 0.2697 7.7 4krg:B
73 5fad:A 160 113 0.0965 0.1375 0.1947 7.9 5fa8:A
74 6b7k:A 290 26 0.0482 0.0379 0.4231 7.9 6b7k:B, 6b7k:C, 6b7k:D
75 5w7k:A 274 46 0.0614 0.0511 0.3043 9.7 5w7k:B
76 3pvc:A 635 61 0.0965 0.0346 0.3607 10.0 3sgl:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218