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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVRAAGGQYVLPDHGRYGQVVRPARLEEFELNPHQNPSRDRDWSVEIRGFYRDLLKSIPTMKQRFRLVIPNDVVRQNIRK
RFEQGPKLTDPAALRHRALMVSADLEEYFREDFLDSQVQGKYNNMDPRTLLNQEIAAAASETQTAHRFFNEGTNVLLETG
IGGEDVTENRVYITREQAYRKGLASLRGDAAVRHLLPAVDPANQTTLQALAAENDLQALVDLLGHLPAAKTAEAYVQRCE
AFHKEAGLRHQKASGGAVLAAWEKFKDEEVNSTVLLHPAYKALIADPSRNPLLRGAADWVRLVEAGGLSTTEPDSAADKL
LKVAQHLYYSDQLPEGFAQDLGVSYLADLKGVDRRLDLLLDEEIAYRQELLLKIYAHTVESIKATASNPTDPAAVKKHLD
AHDWSAFVVPTEGVKSSYEALAL

The query sequence (length=423) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iuf:A6 423 423 1.0000 1.0000 1.0000 0.0 8j9h:A6, 8j9i:A6, 8j9j:A6
2 8q0f:W 116 64 0.0378 0.1379 0.2500 0.75 7ak5:W, 7ak6:W, 7b93:W, 8c2s:W, 8ca3:W, 8ca5:W, 6g2j:W, 6g72:W, 5gup:Q, 8iao:W, 8iap:W, 8ib4:W, 8ib5:W, 8ib9:W, 8iba:W, 8ibd:W, 8ibe:W, 8ic2:W, 8ic3:W, 5lnk:g, 8olt:W, 8om1:W, 7psa:W, 8pw5:W1, 8pw6:W1, 8pw7:W1, 8q0a:W, 8q0j:W, 8q0m:W, 8q0o:W, 8q0q:W, 8q1p:W, 8q1u:W, 8q1y:W, 8q25:W, 8q45:W, 8q46:W, 8q47:W, 8q48:W, 8q49:W, 8q4a:W, 6q9d:A6, 6qa9:A6, 6qbx:A6, 6qc2:A6, 6qc3:A6, 6qc4:A6, 6qc5:A6, 6qc6:A6, 6qc7:A6, 6qc8:A6, 6qc9:A6, 6qca:A6, 6qcf:A6, 7qsd:W, 7qsk:W, 7qsl:W, 7qsm:W, 7qsn:W, 7qso:W, 7r41:W, 7r42:W, 7r43:W, 7r44:W, 7r45:W, 7r46:W, 7r47:W, 7r48:W, 7r4c:W, 7r4d:W, 7r4f:W, 7r4g:W, 8rgp:W, 8rgq:W, 8rgr:W, 8rgt:W, 8ud1:1W, 8ueo:1W, 8uep:1W, 8ueq:1W, 8uer:1W, 8ues:1W, 8uet:1W, 8ueu:1W, 8uev:1W, 8uew:1W, 8uex:1W, 8uey:1W, 8uez:1W, 8ugh:1W, 8ugi:1W, 8ugj:1W, 8ugn:1W, 8ugn:5W, 8ugr:1W, 8ugr:5W, 7v2c:E, 7v2d:E, 7v2e:E, 7v2f:E, 7v2h:E, 7v2k:E, 7v2r:E, 7v30:E, 7v31:E, 7v32:E, 7v33:E, 7v3m:E, 7vb7:E, 7vbn:E, 7vbz:E, 7vwj:E, 7vxp:E, 7vxu:E, 7vy8:E, 7vya:E, 7vyf:E, 7vyh:E, 7vyn:E, 7vz1:E, 7vzv:E, 7vzw:E, 7w00:E, 7w0h:E, 7w0r:E, 7w0y:E, 7w1o:E, 7w1p:E, 7w1t:E, 7w1u:E, 7w1v:E, 7w1z:E, 7w20:E, 7w2k:E, 7w2l:E, 7w2r:E, 7w2u:E, 7w2y:E, 7w31:E, 7w32:E, 7w35:E, 7w4c:E, 7w4d:E, 7w4e:E, 7w4f:E, 7w4g:E, 7w4j:E, 7w4k:E, 7w4l:E, 7w4m:E, 7w4n:E, 7w4q:E, 5xtb:E, 5xtd:E, 5xth:E, 5xti:E, 5xti:BE, 7zd6:g, 7zdh:g, 7zdj:g, 7zdm:g, 7zdp:g, 7zeb:g, 6zk9:g, 6zkc:g, 6zkd:g, 6zke:g, 6zkf:g, 6zkg:g, 6zkh:g, 6zki:g, 6zkj:g, 6zkk:g, 6zkl:g, 6zkm:g, 6zkn:g, 6zko:g, 6zkp:g, 6zkq:g, 6zkr:g, 6zks:g, 6zkt:g, 6zku:g, 6zkv:g, 6zr2:W, 6ztq:W
3 3zy5:A 356 46 0.0402 0.0478 0.3696 3.2 3zy2:A, 3zy3:A, 3zy3:B, 3zy6:A
4 6ss2:AAA 320 66 0.0496 0.0656 0.3182 8.5 4hze:A, 4hze:B, 4hze:C, 4i06:A, 4i06:B, 4i06:C, 4ie2:A, 4ie2:B, 4ie2:C, 4ie3:A, 4ie3:B, 4ie3:C, 4ixu:A, 4ixu:B, 4ixu:C, 4ixv:A, 4ixv:B, 4ixv:C, 1pq3:A, 1pq3:B, 1pq3:C, 1pq3:D, 1pq3:E, 1pq3:F, 6q37:A, 6q37:B, 6q37:C, 6q39:A, 6q39:B, 6q39:C, 6ss4:AAA, 6ss6:AAA, 6ss6:BBB, 6ss6:CCC
5 3gac:E 115 65 0.0520 0.1913 0.3385 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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