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BioLiP
>protein
SVQTAATSWGTVPSIRVYTANHGKITERCWDGKGWYTGAFNEPGDNVSVTSWLVGSAISIRVYASNHGKTTEWCWDGNGW
TKGAYTAT

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f37:A 113 88 0.9318 0.7257 0.9318 5.35e-55 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
2 7e7v:A 271 88 0.8977 0.2915 0.8977 1.88e-49 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
3 7e7v:A 271 86 0.8977 0.2915 0.9186 3.17e-49 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
4 7e7v:A 271 86 0.8636 0.2804 0.8837 3.05e-47 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
5 6zfc:A 87 85 0.7273 0.7356 0.7529 1.14e-42 6zfc:B, 6zfc:C, 6zfc:D, 6zfc:E, 6zfc:F, 3zw0:C, 3zw1:A, 3zw1:B, 3zw2:A, 3zw2:B, 3zw2:C, 3zwe:A, 3zwe:B, 3zwe:C, 3zzv:A, 3zzv:B, 3zzv:C
6 6trv:AAA 294 85 0.4659 0.1395 0.4824 4.41e-12 6trv:BBB
7 6trv:AAA 294 66 0.3295 0.0986 0.4394 3.59e-06 6trv:BBB
8 6trv:AAA 294 83 0.3523 0.1054 0.3735 0.013 6trv:BBB
9 6htn:A 143 79 0.3977 0.2448 0.4430 5.60e-12 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
10 6htn:A 143 78 0.4205 0.2587 0.4744 3.55e-11 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
11 6htn:A 143 29 0.1705 0.1049 0.5172 0.004 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
12 6z6c:BBB 317 89 0.3636 0.1009 0.3596 5.52e-05 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
13 5eo8:A 311 88 0.3523 0.0997 0.3523 2.56e-04 5eo7:A, 5eo7:B, 5eo7:C, 5h47:A, 5h47:B, 5h47:C, 5h47:J, 5h47:D, 5h47:E, 5h47:F, 5h47:G, 5h47:K, 5h47:H, 5h47:I, 5h47:L
14 5mxc:A 313 97 0.3636 0.1022 0.3299 0.002 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
15 5mxc:A 313 100 0.3750 0.1054 0.3300 0.21 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
16 5mxc:A 313 83 0.3295 0.0927 0.3494 0.37 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
17 7c39:A 346 63 0.2159 0.0549 0.3016 0.37 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
18 7c39:A 346 32 0.1477 0.0376 0.4062 8.5 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
19 7tcr:A 263 43 0.1250 0.0418 0.2558 4.0 7tcr:B, 7tcu:A, 7tcu:B, 7tcw:A, 7tcw:B, 7tcx:A, 7tcx:B
20 6er9:A 531 49 0.1591 0.0264 0.2857 4.4 6er9:B, 6era:A, 6era:B, 3gwd:A, 3gwf:A, 4rg3:A, 4rg4:A, 3ucl:A
21 6pi8:B 348 23 0.1136 0.0287 0.4348 5.2 6phr:A, 6phr:B, 6pht:A, 6pht:B, 6pht:C, 6pht:D, 6phz:A, 6phz:B, 6pi1:A, 6pi1:B, 6pi1:C, 6pi1:D, 6pi8:A, 6pia:A, 6pia:B, 6pia:C, 6pia:D, 6pic:A, 6pic:B, 6pic:C, 6pic:D, 6pic:E, 6pic:F, 6pic:G, 6pic:H, 6pid:A, 6pid:B
22 2rfy:A 430 22 0.1136 0.0233 0.4545 5.8 2rfy:B, 2rfy:C, 2rfy:D, 2rfz:A, 2rfz:D, 2rfz:B, 2rfz:C, 2rg0:A, 2rg0:B, 2rg0:C, 2rg0:D
23 6wpw:R 398 35 0.1477 0.0327 0.3714 5.9 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
24 3c9f:B 540 27 0.1250 0.0204 0.4074 7.1 3c9f:A
25 5yqz:R 558 35 0.1477 0.0233 0.3714 7.6 5xez:A, 5xf1:A
26 5xez:B 499 35 0.1477 0.0261 0.3714 8.2 5xf1:B
27 6nff:A 794 66 0.2273 0.0252 0.3030 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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