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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVPTKLEVVAATPTSLLISWDAPAVTVFFYVITYGETGHGVGAFQAFKVPGSKSTATISGLKPGVDYTITVYARGYSKQG
PYKPSPISINYRT

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l0f:H 94 93 0.9677 0.9574 0.9677 1.02e-61 7l0f:F, 7l0f:B, 7l0f:M, 7l0g:C, 7l0g:D, 7l0g:F, 7l0g:H
2 5mtm:B 92 93 0.7957 0.8043 0.7957 8.18e-44
3 5v7p:D 95 93 0.8172 0.8000 0.8172 2.90e-42
4 8f0m:B 91 98 0.7957 0.8132 0.7551 2.85e-39
5 5a43:C 96 94 0.7742 0.7500 0.7660 4.53e-38
6 4lxo:A 184 93 0.7419 0.3750 0.7419 5.62e-38 4lxo:B
7 4lxo:A 184 79 0.2366 0.1196 0.2785 1.41e-05 4lxo:B
8 6d0j:C 90 93 0.7097 0.7333 0.7097 4.83e-35 6d0k:C, 6d0n:C
9 6ux8:B 86 92 0.6989 0.7558 0.7065 2.97e-34
10 3ch8:A 190 93 0.7312 0.3579 0.7312 3.50e-32 2qbw:A
11 8vxu:E 90 95 0.7312 0.7556 0.7158 1.23e-30 7szt:F, 8tgy:C, 8tgy:D, 6wk9:C, 6wk9:G
12 4jmh:A 200 93 0.6667 0.3100 0.6667 1.31e-29 4jmg:A
13 3csb:A 464 95 0.7312 0.1466 0.7158 4.85e-28
14 6gvk:A 201 95 0.3441 0.1592 0.3368 3.11e-05 6gvl:A
15 6gvk:A 201 92 0.2473 0.1144 0.2500 0.11 6gvl:A
16 2mnu:A 93 69 0.2688 0.2688 0.3623 2.64e-04
17 6x39:A 100 77 0.2903 0.2700 0.3506 0.11
18 6tba:7A 292 37 0.1398 0.0445 0.3514 1.4 6tba:7C, 6tba:7B, 6teh:C
19 4ine:A 431 20 0.1075 0.0232 0.5000 4.1 4ine:B
20 1e3d:B 537 50 0.1720 0.0298 0.3200 5.0 1e3d:D
21 1unb:A 288 33 0.1183 0.0382 0.3333 6.0 1e5h:A, 1hjf:A, 2jb8:A, 1rxg:A, 1uo9:A, 1uob:A, 1w2a:X, 1w2n:A, 1w2o:A
22 2zoo:A 438 29 0.1398 0.0297 0.4483 6.3
23 6bt9:B 626 69 0.2151 0.0319 0.2899 6.5 6bt9:A
24 3ddv:B 139 41 0.1398 0.0935 0.3171 8.7 3ddv:D
25 6hiv:DA 1557 14 0.0860 0.0051 0.5714 9.2 6hiw:DA, 7pub:DA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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