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BioLiP
>protein
SVPRARLLQLVKARCELFSTTFNPEGIRTGNKILRQRLKGPALATYYPRKNVGIRELQKEFGTLGLEVDDEVDDDRLEHL
AALRARDKGAPKKKRTAPS

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yw5:YY 99 99 1.0000 1.0000 1.0000 8.70e-69 6ywe:YY, 6ywx:YY, 6ywy:YY
2 8om2:X 98 96 0.4040 0.4082 0.4167 2.98e-18 8d8k:X, 8d8l:X, 5mrc:XX, 5mre:XX, 5mrf:XX, 8om3:X, 8om4:X
3 6xyw:Bx 79 85 0.2929 0.3671 0.3412 1.83e-07
4 3sf6:A 387 40 0.1515 0.0388 0.3750 2.6
5 6n6q:B 448 47 0.1313 0.0290 0.2766 3.1 6n6q:A, 6n6q:C, 6n6q:D
6 2hcf:A 225 63 0.2121 0.0933 0.3333 3.1
7 4ywe:A 476 20 0.1111 0.0231 0.5500 5.7 4ywe:B, 4ywe:C, 4ywe:D, 4ywe:E, 4ywe:F, 4ywe:G, 4ywe:H
8 6iv9:A 874 24 0.0909 0.0103 0.3750 9.0 6iv8:A, 6iv8:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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