Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAISTQGR
GDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSN
PSVQVGEVSIGDRSLNSGTGSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNN
AVYDLTFDYVAVEFNN

The query sequence (length=256) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vme:A 256 256 1.0000 1.0000 1.0000 0.0 2vm9:A, 2vmc:A, 2vmd:A, 2vme:B, 2vme:C, 2vme:D, 2vme:E, 2vme:F
2 2w94:A 254 252 0.4805 0.4843 0.4881 6.60e-78 2w94:B, 2w94:C, 2w95:A, 2w95:B, 2w95:C, 2wn2:A, 2wn2:B, 2wn2:C, 2wn3:A, 2wn3:B, 2wn3:C
3 4ag4:A 340 133 0.1562 0.1176 0.3008 8.84e-09 8pe9:A
4 4bxs:V 1262 116 0.1328 0.0269 0.2931 3.10e-08
5 4bxs:V 1262 90 0.1055 0.0214 0.3000 1.08e-05
6 2qqo:A 431 125 0.1289 0.0766 0.2640 3.39e-08 5dn2:C, 5dn2:D, 5dn2:A, 5dq0:A, 7m22:N, 2qqo:B, 6tdb:A, 6tdb:B, 6tdb:C, 6tdb:D, 6tjt:A, 6tjt:B
7 1czs:A 160 113 0.1289 0.2062 0.2920 7.38e-08
8 1sdd:B 601 110 0.1328 0.0566 0.3091 1.17e-07
9 1sdd:B 601 97 0.1133 0.0483 0.2990 0.002
10 2wuh:A 163 118 0.1133 0.1779 0.2458 6.65e-06
11 7k66:A 1265 95 0.1172 0.0237 0.3158 2.68e-05 1d7p:M, 3hnb:M, 7kbt:A, 6mf0:A, 6mf0:B, 4xzu:M
12 7k66:A 1265 126 0.1172 0.0237 0.2381 2.56e-04 1d7p:M, 3hnb:M, 7kbt:A, 6mf0:A, 6mf0:B, 4xzu:M
13 7kwo:A 1200 95 0.1172 0.0250 0.3158 2.99e-05
14 7kwo:A 1200 126 0.1172 0.0250 0.2381 2.73e-04
15 6mf2:A 1222 95 0.1172 0.0245 0.3158 2.99e-05 4bdv:A, 4bdv:B, 3cdz:B, 3j2q:B, 5k8d:A, 5k8d:B, 2r7e:B
16 6mf2:A 1222 126 0.1172 0.0245 0.2381 2.67e-04 4bdv:A, 4bdv:B, 3cdz:B, 3j2q:B, 5k8d:A, 5k8d:B, 2r7e:B
17 4gz9:A 562 146 0.1328 0.0605 0.2329 7.50e-05 9eou:A, 4gza:H, 2orz:A, 2qqm:A
18 7s0p:M 157 138 0.1133 0.1847 0.2101 3.28e-04
19 4q56:A 101 73 0.0547 0.1386 0.1918 0.006
20 7jjc:B 166 147 0.1250 0.1928 0.2177 0.029 6fmc:A, 6fmf:A, 3i97:A, 3i97:B, 5ijr:A, 5iyy:A, 5iyy:B, 5j1x:A, 5j1x:B, 5j1x:C, 5j1x:D, 5jgi:B, 5jgq:B, 5jhk:A, 7jjc:A, 7jjc:C, 7jjc:D, 7p5u:AAA, 7p5u:BBB, 8pfe:A, 8pfe:C, 6tkk:A
21 7rga:E 270 97 0.1016 0.0963 0.2680 0.12 3qxt:A, 3qxt:B, 3qxv:A, 3qxv:B, 3qxv:C, 3qxv:D, 3qxv:E, 7rg7:A, 7rga:A, 7rga:B, 7rga:C, 7rga:D, 7rga:G, 7rga:F, 2w1q:A, 2w1q:B, 2w1s:A, 2w1s:B, 2w1u:A, 2w1u:C, 2wdb:A, 2wdb:C, 2wdb:D
22 2w1u:B 146 61 0.0703 0.1233 0.2951 0.17 2w1u:D, 2wdb:B
23 4lks:A 157 40 0.0586 0.0955 0.3750 0.55 4lks:C, 4lqr:A, 4p5y:A
24 1gl3:A 367 44 0.0586 0.0409 0.3409 0.58 1gl3:B
25 7m0r:E 458 54 0.0625 0.0349 0.2963 2.0 7m0r:F
26 5e5c:C 479 62 0.0781 0.0418 0.3226 3.3 6ajd:A, 6ajd:B, 7e3u:A, 7e3u:B, 5e5c:A, 6klk:A, 6klk:B, 8wq9:A, 8wq9:B, 5ykd:A, 5ykd:B, 5ykd:C, 5ykd:D
27 8a22:Xg 410 58 0.0820 0.0512 0.3621 4.4 8apn:Xg, 8apo:Xg
28 3dc8:A 483 62 0.0625 0.0331 0.2581 5.2 3dc8:B
29 7wdt:A 819 69 0.0742 0.0232 0.2754 5.7 7wdu:A, 6z14:JJJ
30 6n7j:A 223 58 0.0703 0.0807 0.3103 5.8 6n7j:H
31 4ktp:A 767 64 0.0664 0.0222 0.2656 8.7 4ktp:B, 4ktr:A, 4ktr:D, 4ktr:E, 4ktr:F, 4ktr:G, 4ktr:H

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218