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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP
SQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQH
AKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hb4:A 197 192 1.0000 0.9746 1.0000 2.11e-141 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
2 2gzk:A 159 172 0.1927 0.2327 0.2151 4.05e-06 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
3 2gzk:A 159 71 0.0729 0.0881 0.1972 0.054 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
4 1j5n:A 93 66 0.0885 0.1828 0.2576 1.10e-04
5 1j5n:A 93 64 0.1094 0.2258 0.3281 0.16
6 7zie:B 185 81 0.1406 0.1459 0.3333 1.78e-04 7zie:A
7 1e7j:A 74 48 0.0781 0.2027 0.3125 0.002 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
8 1e7j:A 74 69 0.1198 0.3108 0.3333 1.8 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
9 5jh0:D 157 61 0.0990 0.1210 0.3115 0.006 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
10 5jh0:D 157 72 0.1354 0.1656 0.3611 0.019 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
11 5jh0:D 157 162 0.1771 0.2166 0.2099 0.022 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 4qr9:A 75 71 0.1198 0.3067 0.3239 0.008 4qr9:B
13 4qr9:A 75 67 0.0885 0.2267 0.2537 0.23 4qr9:B
14 6t78:A 77 46 0.0781 0.1948 0.3261 0.010 6t78:B, 3u2b:C
15 1gt0:D 79 51 0.0625 0.1519 0.2353 0.21 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
16 4y60:C 76 49 0.0573 0.1447 0.2245 0.33
17 6l6y:D 80 49 0.0573 0.1375 0.2245 0.43 4a3n:A, 3f27:D, 6l6y:F
18 6cij:N 133 39 0.0521 0.0752 0.2564 0.43 5zdz:N, 5ze1:N, 5ze2:N
19 6cij:N 133 150 0.1719 0.2481 0.2200 0.80 5zdz:N, 5ze1:N, 5ze2:N
20 6zm7:CE 124 40 0.0573 0.0887 0.2750 1.4 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
21 6ofs:A 905 59 0.0990 0.0210 0.3220 2.4
22 8dqv:A 513 80 0.1042 0.0390 0.2500 2.5 8dqv:C, 7utd:A, 7utd:C, 7utd:E, 7utd:G, 7utd:I, 7utd:K, 7utd:M, 7utd:O, 7uur:C, 7uur:F, 7uus:A, 7uus:C, 7uus:E, 7uus:G, 7uus:I, 7uus:K, 7uus:M, 7uus:O
23 8x5f:A 616 111 0.1146 0.0357 0.1982 3.2 8x5b:F, 8x5b:A, 8x5f:B
24 6cik:N 90 38 0.0417 0.0889 0.2105 3.6 6cg0:N, 6cim:N
25 7qxq:A 301 142 0.1927 0.1229 0.2606 5.0 6g75:B, 7ome:A, 7qxq:B, 7qxq:C, 7qxr:A, 7qxr:B, 7qxr:C
26 6kc7:A 963 41 0.0677 0.0135 0.3171 5.7
27 5bju:A 340 50 0.0885 0.0500 0.3400 6.3 5bju:B, 5bjv:A, 5bjv:B, 5bjw:A, 5bjw:B, 5bjx:A, 5bjx:B, 5bjy:A, 5bjy:B
28 5yzg:D 1908 88 0.1458 0.0147 0.3182 6.6 6ahd:D, 8bc8:B, 8bc9:B, 8bca:B, 8bcb:B, 8bcc:B, 8bcd:B, 8bce:B, 8bcf:B, 8bcg:B, 8bch:B, 7bdi:B, 7bdj:B, 7bdk:B, 7bdl:B, 4f92:B, 4f93:B, 6ff7:r, 8h6k:5D, 8h6l:5D, 4kit:B, 5o9z:C, 7os1:B, 8qo9:B, 8qzs:B, 5urj:A, 5urk:A, 5urm:A, 5urm:B, 5xjc:D
29 6rx4:A 474 45 0.0781 0.0316 0.3333 7.6
30 5nal:B 150 35 0.0677 0.0867 0.3714 9.9 5e80:B, 5e80:A, 5e8f:A, 5e8f:C, 5f2u:A, 5f2u:B, 4jv6:B, 4jv8:B, 4jvb:B, 4jvf:B, 5ml2:B, 5ml3:B, 5ml4:B, 5ml6:B, 5ml8:B, 7pad:B, 7pae:B, 7q9q:BBB, 7q9r:BBB, 7q9s:AAA, 7q9s:BBB, 7q9u:DDD, 7q9u:CCC, 7qf9:AAA, 7qf9:BBB, 7qjk:BBB, 7qjk:AAA, 7qjk:CCC, 7qjk:DDD, 3t5g:B, 3t5i:D, 3t5i:A, 3t5i:B, 3t5i:C, 5tar:B, 5tb5:B, 5tb5:D, 5x72:A, 5x73:A, 5x74:A, 5yav:B, 5yaw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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