Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVKGSVDLEKLAFGLTKLNEDDLVGVVQMVTDNKTPEMNVTNNVEEGEFIIDLYSLPEGLLKSLWDYVKKN

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uhe:C 74 71 0.9859 0.9459 0.9859 6.75e-46 8u77:A, 8u77:C, 8u77:E, 8u77:G, 7uhe:A
2 1a6e:B 502 64 0.2113 0.0299 0.2344 1.6
3 4ii3:A 986 47 0.2254 0.0162 0.3404 1.8 9b5c:A, 9b5d:A, 9b5e:A, 9b5f:A, 9b5g:A, 9b5h:A, 9b5i:A, 9b5j:A, 9b5k:A, 9b5l:A, 9b5m:A, 9b5n:A, 9b5o:A, 9b5p:A, 9b5q:A, 9b5r:A, 9b5s:A, 9b5t:A, 9b5u:A, 9b5v:A, 9b5w:A, 9b5x:A, 4ii2:A, 4ii3:C, 6o82:A, 6o82:C, 6o83:A, 6o83:C, 5um6:A
4 1wri:A 93 22 0.1549 0.1183 0.5000 1.8
5 7a1g:I 145 66 0.2817 0.1379 0.3030 2.0 7aju:DS, 7b7d:H, 8bn3:C8, 8bqd:H, 8bqx:H, 8c00:H, 8c01:H, 8cah:I, 8cas:J, 8cbj:S, 8ccs:u, 8cdl:u, 8cdr:u, 8ceh:u, 8cf5:u, 8cg8:u, 8cgn:u, 8civ:u, 8cku:u, 8cmj:u, 7d5s:ST, 5dat:C8, 5dat:c8, 5dc3:C8, 5dc3:c8, 5dge:C8, 5dge:c8, 5dgf:C8, 5dgf:c8, 5dgv:C8, 5dgv:c8, 6eml:H, 8eub:BS, 8evp:BS, 8evq:BS, 8evr:BS, 8evs:BS, 8evt:BS, 8ewb:BS, 8ewc:BS, 6fai:S, 5fci:C8, 5fci:c8, 5fcj:C8, 5fcj:c8, 6fyx:S, 6fyy:S, 6gq1:AI, 6gqb:AI, 6gqv:AI, 6gsm:S, 6gsn:S, 6hhq:T, 6hhq:c8, 5i4l:C8, 5i4l:c8, 6i7o:H, 6i7o:Hb, 8i7j:S, 5it7:S, 5it9:S, 3j6x:18, 3j6y:18, 3j77:18, 3j78:18, 3j80:S, 3j81:S, 3jam:S, 3jap:S, 5juo:PB, 5jup:PB, 5jus:PB, 5jut:PB, 5juu:PB, 8k2d:SS, 8k82:SS, 6ke6:ST, 6lqp:ST, 6lqu:ST, 5lyb:C8, 5lyb:c8, 5m1j:S2, 5mc6:H, 5mei:c8, 5mei:T, 7mpi:BS, 7mpj:BS, 7n8b:BS, 5ndg:C8, 5ndg:c8, 5ndv:C8, 5ndv:c8, 5ndw:C8, 5ndw:c8, 7nrc:SH, 7nrd:SH, 5obm:C8, 5obm:c8, 5on6:c8, 5on6:T, 7osa:uS13, 7osm:uS13, 6q8y:H, 6rbd:S, 6rbe:S, 7rr5:SS, 8rw1:S, 6s47:BT, 8s8d:S, 8s8e:S, 8s8f:S, 8s8g:S, 8s8h:S, 8s8i:S, 8s8j:S, 6snt:S, 7suk:L3, 6sv4:H, 6sv4:Hb, 6sv4:Hc, 6t4q:SS, 6t7i:SS, 6t7t:SS, 6t83:Sb, 6t83:t, 5tbw:T, 5tbw:c8, 6tb3:H, 5tga:C8, 5tga:c8, 5tgm:C8, 5tgm:c8, 6tnu:H, 4u3m:C8, 4u3m:c8, 4u3n:C8, 4u3n:c8, 4u3u:C8, 4u3u:c8, 4u4n:C8, 4u4n:c8, 4u4o:C8, 4u4o:c8, 4u4q:C8, 4u4q:c8, 4u4r:C8, 4u4r:c8, 4u4u:C8, 4u4u:c8, 4u4y:C8, 4u4y:c8, 4u4z:C8, 4u4z:c8, 4u50:C8, 4u50:c8, 4u51:C8, 4u51:c8, 4u52:C8, 4u52:c8, 4u53:C8, 4u53:c8, 4u55:C8, 4u55:c8, 4u56:C8, 4u56:c8, 4u6f:C8, 4u6f:c8, 4uer:M, 6uz7:S, 4v4b:AM, 4v6i:AM, 4v7h:AM, 4v7r:AL, 4v7r:CL, 4v88:AS, 4v88:CS, 4v8y:AS, 4v8z:AS, 4v92:BS, 6wdr:S, 6woo:SS, 6xiq:AI, 6xir:AI, 6y7c:S, 6z6j:SS, 6z6k:SS, 6zce:T, 7zpq:AS, 6zqd:DS, 6zqe:DS, 6zqf:DS, 6zqg:DS, 7zrs:AS, 6zu9:J, 7zuw:AS, 7zux:DS, 6zvi:A, 7zw0:sH
6 3m84:A 348 59 0.2394 0.0489 0.2881 2.5 3qty:A, 3qty:B
7 6bff:A 178 31 0.1690 0.0674 0.3871 2.7 6bff:B, 6bfh:A
8 7d4i:ST 111 46 0.2394 0.1532 0.3696 5.6 7d63:ST
9 3wx7:A 402 29 0.1549 0.0274 0.3793 6.7 3wx7:B
10 5mqr:A 1082 60 0.2254 0.0148 0.2667 7.1 5mqs:A
11 2ynp:A 601 46 0.1972 0.0233 0.3043 8.4 8ens:A, 8enw:A, 8enw:B, 8enx:A, 8hqt:A, 8hqv:A, 8hqx:A, 4j73:A, 4j77:A, 4j77:B, 4j78:A, 4j79:A, 4j81:B, 4j81:A, 4j82:A, 4j82:B, 4j84:A, 4j84:B, 4j86:A, 4j86:B, 2ynn:A
12 7yid:A 660 47 0.1690 0.0182 0.2553 9.5 7yid:B, 7yid:C, 7yid:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218