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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALS
LSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAERGDWDVAEALLEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLIS
TLMEALRLSVADHTVARARALPDWRATSARLQKEHRAILAALRAGESTVAATLIKEHIEGYYEETAAAEA

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2di3:A 231 230 1.0000 0.9957 1.0000 4.39e-165 2di3:B
2 6wfq:C 228 233 0.2783 0.2807 0.2747 3.90e-07 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
3 5dv5:A 267 77 0.1043 0.0899 0.3117 4.40e-05 5dv5:B
4 4p9u:E 272 75 0.1043 0.0882 0.3200 4.51e-05 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
5 1h9t:A 232 54 0.0870 0.0862 0.3704 3.48e-04 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
6 4wwc:A 213 79 0.0957 0.1033 0.2785 4.43e-04
7 4u0v:A 243 63 0.0826 0.0782 0.3016 5.47e-04 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
8 7u5q:A 217 201 0.2348 0.2488 0.2687 6.15e-04 7u5q:B
9 7zla:B 458 87 0.1087 0.0546 0.2874 0.004 7pq9:AAA, 7pq9:BBB, 7pq9:CCC, 7pq9:DDD, 7pq9:EEE, 7pq9:FFF, 7pq9:GGG, 7pq9:HHH, 7pq9:III, 7pq9:JJJ, 7zpa:A, 7zpa:B
10 7xp0:A 200 218 0.2435 0.2800 0.2569 0.006 7xp1:A
11 5d4s:B 83 62 0.0696 0.1928 0.2581 0.012 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
12 7zn5:B 435 69 0.0870 0.0460 0.2899 0.015 7zn5:A
13 6za0:A 240 224 0.2652 0.2542 0.2723 0.040 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
14 5b50:A 324 99 0.1304 0.0926 0.3030 0.34 5az3:A, 5b4z:A, 5b51:A
15 6m13:b 688 61 0.0870 0.0291 0.3279 0.46 7dsy:a, 7dsy:b, 7dts:a, 7dts:b, 7elw:a, 7elw:b, 6m11:a, 6m11:b, 6m12:a, 6m12:b, 6m13:a, 4o1o:A, 4o1o:B, 4o1o:C, 4o1o:D, 4o1p:A, 4o1p:B, 4o1p:C, 4o1p:D
16 7b5y:A 206 53 0.0652 0.0728 0.2830 0.50 7b5u:A, 7b5u:B, 7b5y:C, 7b5y:B, 7b5y:D, 7oz3:A, 7oz3:B, 7oz3:C, 7oz3:D
17 9avv:D 429 61 0.0696 0.0373 0.2623 0.84 9avu:D, 9awj:D, 9awk:D
18 3i5a:A 319 53 0.0826 0.0596 0.3585 2.5
19 3by6:C 120 57 0.0696 0.1333 0.2807 4.1 3by6:A
20 7ofl:A 335 54 0.0870 0.0597 0.3704 4.7 7ofl:B
21 4oau:C 692 61 0.0783 0.0260 0.2951 4.7 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
22 8g46:B 158 79 0.0826 0.1203 0.2405 7.2 8ov6:B
23 8t5s:A 693 34 0.0522 0.0173 0.3529 8.3
24 8yla:A 328 58 0.0609 0.0427 0.2414 9.1 8yla:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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