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BioLiP
>protein
SVIYQTSLMSALLSGVYEGDTTIADLLAHGDFGLGTFNELDGEMIAFSSQVYQLRADGSARAAKPEQKTPFAVMTWFQPQ
YRKTFDAPVSRQQIHDVIDQQIPSDNLFCALRIDGNFRHAHTRTVPRQTPPYRAMTDVLDDQPVFRFNQREGVLVGFRTP
QHMQGINVAGYHEHFITDDRQGGGHLLDYQLESGVLTFGEIHKLMIDLPADSAFLQANLHPSNLDAAIRSVEN

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yho:A 238 233 0.9914 0.9706 0.9914 3.09e-175 6inb:A, 6inc:A, 6j92:A, 6j92:B, 5yho:B
2 5xne:A 235 232 0.4163 0.4128 0.4181 1.01e-66 6j3d:A, 6j3d:B, 5xne:B
3 4bt2:A 237 219 0.3605 0.3544 0.3836 1.85e-56 4bt3:A, 4bt4:A, 4bt5:A, 4bt6:A, 4bt7:A
4 1xv2:C 233 236 0.3348 0.3348 0.3305 1.33e-40 1xv2:A, 1xv2:B, 1xv2:D
5 5uj5:A 132 55 0.0901 0.1591 0.3818 1.0
6 1qan:A 236 38 0.0515 0.0508 0.3158 1.8 1qao:A, 1qaq:A
7 6k20:A 465 46 0.0644 0.0323 0.3261 5.1 6iii:A, 6iny:A, 6lna:A, 6lna:B
8 6gvk:A 201 39 0.0601 0.0697 0.3590 5.2 6gvl:A
9 7e40:D 345 27 0.0472 0.0319 0.4074 5.7 7e40:B
10 7wfx:A 493 38 0.0558 0.0264 0.3421 9.6 7wfx:B, 7wg1:A, 7wg1:B, 7wg2:A, 7wg4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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