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BioLiP
>protein
SVIYQTSLMSALLSGVYEGDTTIADLLAHGDFGLGTFNELDGEMIAFSSQVYQLRADGSARAAKPEQKTPFAVMTWFQPQ
YRKTFDAPVSRQQIHDVIDQQIPSDNLFCALRIDGNFRHAHTRTVPRQTPPYRAMTDVLDDQPVFRFNQREGVLVGFRTP
QHMQGINVAGYHEHFITDDRQGGGHLLDYQLESGVLTFGEIHKLMIDLP

The query sequence (length=209) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yho:A 238 209 0.9904 0.8697 0.9904 1.48e-156 6inb:A, 6inc:A, 6j92:A, 6j92:B, 5yho:B
2 5xne:A 235 209 0.4354 0.3872 0.4354 1.79e-63 6j3d:A, 6j3d:B, 5xne:B
3 4bt2:A 237 209 0.3923 0.3460 0.3923 6.50e-56 4bt3:A, 4bt4:A, 4bt5:A, 4bt6:A, 4bt7:A
4 1xv2:C 233 199 0.3445 0.3090 0.3618 6.57e-39 1xv2:A, 1xv2:B, 1xv2:D
5 5uj5:A 132 55 0.1005 0.1591 0.3818 1.0
6 1qan:A 236 38 0.0574 0.0508 0.3158 1.6 1qao:A, 1qaq:A
7 6k20:A 465 46 0.0718 0.0323 0.3261 4.3 6iii:A, 6iny:A, 6lna:A, 6lna:B
8 7e40:D 345 27 0.0526 0.0319 0.4074 4.9 7e40:B
9 7wfx:A 493 38 0.0622 0.0264 0.3421 7.3 7wfx:B, 7wg1:A, 7wg1:B, 7wg2:A, 7wg4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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