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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVIGVFSKGRATGHASVMSVLRYVPRARVPWQPSRFGRENLADDDMAQLWGTGRYRTGPGNYNSGYSTKKTHALEDSTVS
IIPKHELEKFMPDISLGSKALVTPVSLMSARNGHRVTHDLIHSYDPYIGRLQKPAVVDHDNITVEDPNRVGLNAATLDCR
SRIYRWLRRGPFFQEDNYFRRSTKLQRNGPVPVSVHEVPLMQRIIRLARRGHLKAACEEYRRVTSVPPVDVYRALTAACV
PGAKLADAIAIFEDGHSRLFYVARDGEVLHNMLRCAIRAKHRVRVMWVYNVMVGRHYENVVVRAEVDVIWRYRIASLALE
YLLDSNAGEEARTVYDYLVENELVDCDLHVRLGHVMQQALKEGKTVHVQQDALDGMALSQNVVAVAPQVAVAVYARYLET
MQEGAAWTDARGLPLTDPAKTGADTNGAAAVAWLKAAFPDIDPVAVLRLARFRRSSKDLMAKDRPVYVQRAAQWVELLSS
AHQTREEAPLTYLRKSRPSMANPNVRVAWLPERQRAHALLASDEGFKFAYAGPHTRFVEETFAYGENTLQSRYLAQQPVH
TEVTPSVALGAAAVAAGMSSGSAL

The query sequence (length=584) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ane:ae 584 584 1.0000 1.0000 1.0000 0.0
2 7aor:ae 574 569 0.6438 0.6551 0.6608 0.0
3 7pua:DF 594 582 0.6336 0.6229 0.6357 0.0 6hiv:DF, 6hiw:DF, 6hiz:DF, 7pub:DF, 6sg9:DF, 6sgb:DF
4 6s54:A 453 43 0.0274 0.0353 0.3721 2.0 6s54:B, 6s54:C, 6s54:D
5 3aw5:A 438 39 0.0240 0.0320 0.3590 7.7 6k3d:A, 8p4g:A, 8p4g:B
6 6sw9:U 149 50 0.0325 0.1275 0.3800 9.4 5jb3:U, 5jbh:U, 6swc:U, 6swe:U, 4v4n:BU, 4v6u:AU, 7zag:U, 7zah:U, 7zai:U, 7zhg:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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