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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVFNKDERIMDLVSKHYNVELCAANLYFHLATVSKALGYDNVAAFFVKMGSDKQSAHMSRLVKYMMKVDSILKINQISVP
ELVSFETIQEVLDAALKMESKVRESVKNVTEISLLAKDFETFERMQWFVKDSIEDLEEISDVWTYVHSPNVNLINIENIV
GKKL

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7die:A 164 164 1.0000 1.0000 1.0000 1.68e-119 7die:B, 7die:C, 7die:D, 7die:E, 7die:F
2 7vp8:A 168 152 0.2683 0.2619 0.2895 6.79e-15
3 4cmy:B 164 127 0.2134 0.2134 0.2756 6.75e-14 4cmy:A, 4cmy:C, 4cmy:D, 4cmy:E, 4cmy:F, 4cmy:G, 4cmy:H, 4cmy:I, 4cmy:J, 4cmy:K, 4cmy:L, 4cmy:M, 4cmy:N, 4cmy:O, 4cmy:P, 4cmy:Q, 4cmy:R, 4cmy:S, 4cmy:T, 4cmy:U, 4cmy:V, 4cmy:W, 4cmy:X
4 8w6q:A 173 163 0.2805 0.2659 0.2822 2.86e-12 8w6m:A, 8w6s:A, 8w6u:A, 8w6y:A, 8w73:A, 8w74:A, 8w79:A, 8w7b:A, 8w7o:A, 8w7q:A, 8w7t:A, 8w7u:A, 8w7v:A, 8wpv:A, 8wqu:A, 8wqu:B, 8wqu:C, 8wqu:D, 8wqu:E, 8wqu:F, 8wqu:G, 8wqu:H, 8wqu:I, 8wqu:J, 8wqu:K, 8wqu:L, 8wqu:M, 8wqu:N, 8wqu:O, 8wqu:P, 8wqu:Q, 8wqu:R, 8wqu:S, 8wqu:T, 8wqu:U, 8wqu:V, 8wqu:W, 8wqu:X, 8wqv:A, 8wqv:B, 8wqv:C, 8wqv:D, 8wqv:E, 8wqv:F, 8wqv:G, 8wqv:H, 8wqv:I, 8wqv:J, 8wqv:K, 8wqv:L, 8wqv:M, 8wqv:N, 8wqv:O, 8wqv:P, 8wqv:Q, 8wqv:R, 8wqv:S, 8wqv:T, 8wqv:U, 8wqv:V, 8wqv:W, 8wqv:X, 8wqx:A, 8wqx:B, 8wqx:C, 8wqx:D, 8wqx:E, 8wqx:F, 8wqx:G, 8wqx:H, 8wqx:I, 8wqx:J, 8wqx:K, 8wqx:L, 8wqx:M, 8wqx:N, 8wqx:O, 8wqx:P, 8wqx:Q, 8wqx:R, 8wqx:S, 8wqx:T, 8wqx:U, 8wqx:V, 8wqx:W, 8wqx:X, 8wqy:A, 8wqy:B, 8wqy:C, 8wqy:D, 8wqy:E, 8wqy:F, 8wqy:G, 8wqy:H, 8wqy:I, 8wqy:J, 8wqy:K, 8wqy:L, 8wqy:M, 8wqy:N, 8wqy:O, 8wqy:P, 8wqy:Q, 8wqy:R, 8wqy:S, 8wqy:T, 8wqy:U, 8wqy:V, 8wqy:W, 8wr0:A, 8wr0:B, 8wr0:C, 8wr0:D, 8wr0:E, 8wr0:F, 8wr0:G, 8wr0:H, 8wr0:I, 8wr0:J, 8wr0:K, 8wr0:M, 8wr0:N, 8wr0:O, 8wr0:P, 8wr0:Q, 8wr0:R, 8wr0:S, 8wr0:T, 8wr0:U, 8wr0:V, 8wr0:W, 8wr0:X, 8wr0:L
5 3bvi:F 173 127 0.1829 0.1734 0.2362 2.03e-10 3bvf:A, 3bvf:B, 3bvf:C, 3bvf:D, 3bvf:E, 3bvf:F, 3bvi:A, 3bvi:B, 3bvi:C, 3bvi:D, 3bvi:E, 3bvk:A, 3bvk:B, 3bvk:C, 3bvk:D, 3bvk:E, 3bvk:F, 3bvl:A, 3bvl:B, 3bvl:C, 3bvl:D, 3bvl:E, 3bvl:F, 5c6f:A, 5c6f:B, 5c6f:J, 5c6f:K, 3egm:A, 3egm:B, 3egm:C, 3egm:D, 3egm:E, 3egm:F
6 7dya:H 164 160 0.2073 0.2073 0.2125 9.53e-10 7dl5:H, 7dl5:A, 7dy8:H, 7dy8:A, 7dya:A, 7dya:B, 7dya:C, 7dya:D, 7dya:E, 7dya:F, 7dya:G, 7dyb:H, 7dyb:A, 7dyb:B, 6ls0:H, 6ls0:A, 6ls0:B, 6ls0:C, 6ls3:B, 6ls3:E, 6ls3:A, 6ls3:C, 6ls3:D, 6ls3:F, 6ls3:G, 6ls3:H, 6txi:A, 6txi:B, 6txi:C, 6txi:D, 6txi:E, 6txi:F, 6txi:G, 6txi:H, 6txj:A, 6txj:B, 6txj:C, 6txj:D, 6txj:E, 6txj:F, 6txj:G, 6txj:H, 6txk:A, 6txk:B, 6txk:C, 6txk:D, 6txk:E, 6txk:F, 6txk:G, 6txk:H, 6txl:A, 6txl:B, 6txl:C, 6txl:D, 6txl:E, 6txl:F, 6txl:G, 6txl:H, 6txn:A, 6txn:B, 6txn:C, 6txn:D, 6txn:E, 6txn:F, 6txn:G, 6txn:H, 7v4v:H, 7v4v:A, 7v4v:B, 7v4v:C, 1vlg:A, 1vlg:B, 1vlg:C, 1vlg:D, 1vlg:E, 1vlg:F, 1vlg:G, 1vlg:H, 7vvs:H, 7vvs:A, 7vvs:B, 7vvs:C, 7vvs:D, 7vvs:E, 7vvs:F, 7vvs:G, 7x9x:A, 7x9x:B, 7x9z:A, 7x9z:B, 7xa1:A, 7xa2:A, 7xa4:A
7 4reu:A 164 127 0.1585 0.1585 0.2047 9.83e-10 4reu:B, 4reu:C, 4reu:D, 4reu:E, 4reu:F, 4xgs:A, 4xgs:B, 4xgs:C, 4xgs:D, 4xgs:E, 4xgs:F, 4ztt:A, 4ztt:B, 4ztt:C, 4ztt:D, 4ztt:E, 4ztt:F
8 2jd6:0 167 129 0.1829 0.1796 0.2326 1.04e-08 2jd6:1, 2jd6:2, 2jd6:3, 2jd6:4, 2jd6:5, 2jd6:6, 2jd6:7, 2jd6:8, 2jd6:9, 2jd6:A, 2jd6:B, 2jd6:C, 2jd6:D, 2jd6:E, 2jd6:F, 2jd6:G, 2jd6:H, 2jd6:I, 2jd6:J, 2jd6:K, 2jd6:L, 2jd6:M, 2jd6:N, 2jd6:O, 2jd6:P, 2jd6:Q, 2jd6:R, 2jd6:S, 2jd6:T, 2jd6:U, 2jd6:V, 2jd6:W, 2jd6:X, 2jd6:Y, 2jd6:Z, 2jd7:0, 2jd7:1, 2jd7:2, 2jd7:3, 2jd7:4, 2jd7:5, 2jd7:6, 2jd7:7, 2jd7:8, 2jd7:9, 2jd7:A, 2jd7:B, 2jd7:C, 2jd7:D, 2jd7:E, 2jd7:F, 2jd7:G, 2jd7:H, 2jd7:I, 2jd7:J, 2jd7:K, 2jd7:L, 2jd7:M, 2jd7:N, 2jd7:O, 2jd7:P, 2jd7:Q, 2jd7:R, 2jd7:S, 2jd7:T, 2jd7:U, 2jd7:V, 2jd7:W, 2jd7:X, 2jd7:Y, 2jd7:Z, 2jd8:0, 2jd8:1, 2jd8:2, 2jd8:3, 2jd8:4, 2jd8:5, 2jd8:6, 2jd8:7, 2jd8:8, 2jd8:9, 2jd8:A, 2jd8:B, 2jd8:C, 2jd8:D, 2jd8:E, 2jd8:F, 2jd8:G, 2jd8:H, 2jd8:I, 2jd8:J, 2jd8:K, 2jd8:L, 2jd8:M, 2jd8:N, 2jd8:O, 2jd8:P, 2jd8:Q, 2jd8:R, 2jd8:S, 2jd8:T, 2jd8:U, 2jd8:V, 2jd8:W, 2jd8:X, 2jd8:Y, 2jd8:Z
9 6kh0:A 170 98 0.1890 0.1824 0.3163 1.68e-06 6a4u:C, 6a4u:D, 7cpc:B, 7cpc:A, 7cpc:C, 7cpc:D, 7cpc:E, 7cpc:F, 7cpi:E, 7cpi:A, 7cpi:B, 7cpi:C, 7cpi:D, 7cpi:F, 7dqo:A, 7dqo:B, 7dqo:C, 7dqo:D, 7dqo:E, 7dqo:F, 7dqo:G, 7dqo:H, 7dqo:I, 7dqo:J, 7dqo:K, 7dqo:L, 7ek4:A, 7ek4:B, 7ek4:C, 7ek4:D, 7ek4:E, 7ek4:F, 7ek5:A, 7ek5:B, 7ek5:C, 7ek5:D, 6kh0:B, 6kh0:C, 6kh0:D, 6kh0:E, 6kh0:F, 6kh1:A, 6kh3:A, 6kh4:A, 6kh5:A, 6lbc:A, 6lbc:B, 6lbc:C, 6lbc:D, 6lbc:E, 6lbc:F, 6lbd:A, 6lru:A, 6lrx:A, 7xrg:A
10 6lp5:A 170 157 0.2500 0.2412 0.2611 3.10e-05 6lp5:B, 6lp5:C, 6lp5:D, 6lp5:E, 6lp5:F
11 5ls9:F 165 129 0.1402 0.1394 0.1783 3.90e-05 5ls9:I, 1s3q:A, 1s3q:B, 1s3q:C, 1s3q:D, 1s3q:E, 1s3q:F, 1s3q:G, 1s3q:H, 1s3q:I, 1s3q:J, 1s3q:K, 1s3q:L, 1sq3:A, 1sq3:B, 1sq3:C, 1sq3:D, 1sq3:E, 1sq3:F, 1sq3:G, 1sq3:H, 1sq3:I, 1sq3:J, 1sq3:K, 1sq3:L
12 6l55:C 170 137 0.2012 0.1941 0.2409 5.94e-05 6kzy:A, 6kzy:B, 6kzy:C, 6kzy:D, 6l55:A, 6l55:B, 6l55:D, 6l55:E, 6l55:F, 6l55:G, 6l55:H, 6l55:I, 6l55:J, 6l55:K, 6l55:L, 6l56:A, 6l56:B, 6l56:C, 6l56:D, 6l56:E, 6l56:F, 6l56:G, 6l56:H, 6l56:I, 6l56:J, 6l56:K, 6l56:L, 6l56:M, 6l56:N, 6l56:O, 6l56:P, 6l56:Q, 6l56:R, 6l56:S, 6l56:T, 6l56:U, 6l56:V, 6l56:W, 6l56:X, 6l58:A, 6l58:C, 6l58:B, 6l58:D
13 7xz4:A 203 139 0.2195 0.1773 0.2590 4.50e-04
14 6ljg:A 170 137 0.1951 0.1882 0.2336 5.96e-04 7dlb:A, 7dlb:B, 6lij:A
15 8gy1:A 169 138 0.2012 0.1953 0.2391 7.25e-04 7emk:A, 8hct:A
16 7vt2:A 169 137 0.1829 0.1775 0.2190 0.005 7vt2:S, 7vt2:I, 7vt2:O, 7vt2:V, 7vt2:C, 7vt2:Q, 7vt2:U, 7vt2:a, 7vt2:c, 7vt2:d, 7vt2:e, 7vt2:f, 7vt2:g, 7vt2:i, 7vt2:j, 7vt2:k, 7vt2:l, 7vt2:m, 7vt2:o, 7vt2:q, 7vt2:w, 7vt2:s, 7vt2:v, 7vt2:B, 7vt2:D, 7vt2:E, 7vt2:F, 7vt2:H, 7vt2:J, 7vt2:K, 7vt2:L, 7vt2:M, 7vt2:N, 7vt2:P, 7vt2:R, 7vt2:T, 7vt2:W, 7vt2:X, 7vt2:Z, 7vt2:b, 7vt2:h, 7vt2:n, 7vt2:p, 7vt2:r, 7vt2:t, 7vt2:u, 7vt2:x, 8w91:b, 8w93:b, 8w94:b, 8w95:b
17 3shx:A 175 126 0.1829 0.1714 0.2381 0.010 6i36:A, 6i9p:A, 6i9t:A, 6iaf:A, 6iaj:A, 5j8s:A, 5j8w:A, 5j93:A, 5j9v:A, 5jac:A, 3ka3:A, 3ka4:A, 3ka6:A, 3ka8:A, 3ka9:A, 4lpj:A, 4lpm:A, 4lpn:A, 4lqh:A, 4lqj:A, 4lqv:A, 4lyu:A, 4lyx:A, 1mfr:A, 1mfr:B, 1mfr:C, 1mfr:D, 1mfr:E, 1mfr:F, 1mfr:G, 1mfr:H, 1mfr:I, 1mfr:J, 1mfr:K, 1mfr:L, 1mfr:M, 1mfr:N, 1mfr:O, 1mfr:P, 1mfr:Q, 1mfr:R, 1mfr:S, 1mfr:T, 1mfr:U, 1mfr:V, 1mfr:W, 1mfr:X, 4mjy:A, 4mku:A, 4ml5:A, 4mn9:A, 4my7:A, 3rbc:A, 3rbc:B, 3rbc:C, 3rbc:D, 3rbc:E, 3rbc:F, 3rbc:G, 3rbc:H, 3rbc:I, 3rbc:J, 3rbc:K, 3rbc:L, 3rbc:M, 3rbc:N, 3rbc:O, 3rbc:P, 3rbc:Q, 3rbc:R, 3rbc:S, 3rbc:T, 3rbc:U, 3rbc:V, 3rbc:W, 3rbc:X, 3re7:A, 3re7:B, 3re7:C, 3re7:D, 3re7:E, 3re7:F, 3re7:G, 3re7:H, 3re7:I, 3re7:J, 3re7:K, 3re7:L, 3re7:V, 3re7:M, 3re7:N, 3re7:O, 3re7:P, 3re7:Q, 3re7:R, 3re7:S, 3re7:T, 3re7:U, 3re7:W, 3re7:X, 3rgd:A, 3rgd:B, 3rgd:C, 3rgd:D, 3rgd:E, 3rgd:F, 3rgd:G, 3rgd:H, 3rgd:I, 3rgd:J, 3rgd:K, 3rgd:L, 3rgd:M, 3rgd:N, 3rgd:O, 3rgd:P, 3rgd:Q, 3rgd:R, 3rgd:S, 3rgd:T, 3rgd:U, 3rgd:V, 3rgd:W, 3rgd:X, 3se1:A, 3sh6:A, 5xhi:A, 5xhm:A, 5xhn:A, 5xho:A
18 1z6o:M 191 97 0.1402 0.1204 0.2371 0.028 1z6o:N, 1z6o:O, 1z6o:P, 1z6o:Q, 1z6o:R, 1z6o:S, 1z6o:T, 1z6o:U, 1z6o:V, 1z6o:W, 1z6o:X
19 5zur:B 155 132 0.1707 0.1806 0.2121 0.13 5zur:A, 5zur:C
20 5zrt:A 160 51 0.0793 0.0813 0.2549 0.14 5zlq:A, 5zrt:B
21 3e6s:A 159 114 0.1220 0.1258 0.1754 0.48 3e6s:B, 3e6s:C, 3e6s:D, 3e6s:E, 3e6s:F, 4ism:A, 4ism:D, 4ism:B, 4ism:C, 4ism:E, 4ism:F, 4ism:G, 4ism:H, 4isp:A, 4isp:D, 4isp:B, 4isp:C, 4isp:E, 4isp:F, 4isp:G, 4isp:H, 4itt:D, 4itt:B, 4itt:C, 4itt:E, 4itt:G, 4itt:H, 4itw:A, 4itw:D, 4itw:B, 4itw:C, 4itw:E, 4itw:F, 4itw:G, 4itw:H, 4iwj:A, 4iwj:D, 4iwj:B, 4iwj:C, 4iwj:E, 4iwj:F, 4iwj:G, 4iwj:H, 4iwk:A, 4iwk:B, 4iwk:C, 4iwk:D, 4iwk:E, 4iwk:F, 4ixk:A, 4ixk:D, 4ixk:B, 4ixk:C, 4ixk:E, 4ixk:F, 4ixk:G, 4ixk:H, 4zkh:A, 4zkh:D, 4zkh:B, 4zkh:C, 4zkh:E, 4zkh:F, 4zkh:G, 4zkh:H, 4zkw:A, 4zkw:D, 4zkw:B, 4zkw:C, 4zkw:E, 4zkw:F, 4zkw:G, 4zkw:H, 4zkx:A, 4zkx:D, 4zkx:B, 4zkx:C, 4zkx:E, 4zkx:F, 4zkx:G, 4zkx:H, 4zl5:B, 4zl5:A, 4zl5:C, 4zl5:D, 4zl5:E, 4zl5:F, 4zl6:B, 4zl6:A, 4zl6:C, 4zl6:D, 4zl6:E, 4zl6:F, 4zlw:A, 4zlw:D, 4zlw:B, 4zlw:C, 4zlw:E, 4zlw:F, 4zlw:G, 4zlw:H, 4zmc:A, 4zmc:D, 4zmc:C, 4zmc:E, 4zmc:F, 4zmc:G, 4zmc:H
22 8pqi:A 299 33 0.0854 0.0468 0.4242 0.48 6joi:A
23 3vnx:A 195 79 0.1341 0.1128 0.2785 3.1
24 8ffz:C 797 103 0.1585 0.0326 0.2524 3.6
25 7um1:D 515 96 0.1463 0.0466 0.2500 3.8 7s00:D
26 7s01:D 631 96 0.1463 0.0380 0.2500 5.1 7s00:F
27 2grm:A 315 168 0.2744 0.1429 0.2679 5.5 2aw6:B, 2aw6:A, 2axz:A, 2axz:B, 2axz:D, 2axz:C, 2grl:B, 2grm:B
28 3ucj:A 222 50 0.1037 0.0766 0.3400 5.9 3ucj:B, 3uck:A, 3uck:B, 3ucm:A, 3ucm:B, 3ucn:A, 3ucn:B, 3uco:A, 3uco:B
29 8f6t:A 428 21 0.0732 0.0280 0.5714 6.1
30 3r2l:A 154 154 0.1707 0.1818 0.1818 9.8 3r2m:A, 3r2r:A, 3r2s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218