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BioLiP
>protein
SVEVYRQKIEKGGYSAAYEATRRYEREEIEVLSWSSRWESAWSKFGEAVKALGKIEGAPRALVIAKVQEALAYMSKPLPN
MKLAMAAAVQAVRACEQLPGMNRERCLDAVAGALGVAKDWIRREMT

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6v7b:a 126 126 1.0000 1.0000 1.0000 3.49e-88 6v7b:b, 6v7b:c, 6v7b:d, 6v7b:e, 6v7b:f, 6v7b:g, 6v7b:h, 6v7b:i, 6v7b:j, 6v7b:k, 6v7b:l, 6v7b:m, 6v7b:n, 6v7b:o, 6v7b:p, 6v7b:q, 6v7b:r, 6v7b:s, 6v7b:t, 6v7b:u, 6v7b:v, 6v7b:w
2 5yox:A 183 27 0.0873 0.0601 0.4074 0.95 5yox:B, 5yox:C, 5yox:D, 5yox:E, 5yox:F, 5yox:G, 5yox:H
3 4j1t:E 373 122 0.2460 0.0831 0.2541 1.6 4j16:A, 4j16:B, 4j1t:B, 4o9u:E, 4o9u:F
4 1qho:A 686 36 0.0873 0.0160 0.3056 5.2 1qhp:A
5 2or1:L 63 31 0.1032 0.2063 0.4194 8.4 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R
6 7tr4:H 211 61 0.1270 0.0758 0.2623 8.5
7 2qyj:A 154 37 0.1032 0.0844 0.3514 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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