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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLT
YLAHEDTLIILAQNGYGQLEHIPFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQDNALTRQFRDLVQDSQIDIVLEANIQ
QAIWYKLLVNLGINSITLLGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQLEVEAIQGFIYRR
AREHNLDTPYLDTIYSFLRAYQQ

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yca:B 286 282 0.9962 0.9161 0.9291 0.0 4s3m:A, 4s3m:B, 4yca:A
2 4ol9:A 297 289 0.3232 0.2862 0.2941 2.25e-25
3 2ofp:B 294 230 0.1977 0.1769 0.2261 3.01e-09 2ofp:A, 1yjq:A, 1yon:A
4 5x20:A 312 310 0.2471 0.2083 0.2097 1.34e-08 3wfj:A, 3wfj:B, 3wfj:C, 3wfj:D, 3wfj:E, 3wfj:G, 5x20:B, 5x20:C, 5x20:D, 5x20:E
5 5ayv:B 303 294 0.2319 0.2013 0.2075 5.22e-06 5ayv:A, 5hws:A, 5hws:B, 5hws:C, 5hws:D
6 6d2y:A 428 64 0.0722 0.0444 0.2969 3.59e-04
7 3wfj:F 263 294 0.2357 0.2357 0.2109 0.035 3wfj:H
8 8ix9:C 314 81 0.0798 0.0669 0.2593 0.051 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B
9 3hwr:A 299 125 0.0913 0.0803 0.1920 0.21 3hwr:B
10 2wzn:A 338 185 0.1673 0.1302 0.2378 0.36 4x8i:A, 4x8i:B, 4x8i:C
11 7q2a:B 352 53 0.0684 0.0511 0.3396 0.36 3lm4:A, 3lm4:B, 3lm4:C, 3lm4:D, 7q2a:A, 7q2a:C, 7q2a:D
12 6chd:A 506 48 0.0570 0.0296 0.3125 1.4 3bju:A, 3bju:B, 3bju:C, 3bju:D, 6chd:B, 4dpg:A, 4dpg:B, 4dpg:C, 4dpg:D, 4dpg:E, 4dpg:F, 4dpg:G, 4dpg:H, 7ea9:A, 7ea9:B, 7ea9:C, 7ea9:D, 6ild:A, 6ild:B, 6ilh:A, 6ilh:B, 4ycu:A, 4ycu:B, 4ycw:A, 4ycw:B, 4ycw:E, 4ycw:F
13 2dwc:B 409 96 0.0875 0.0562 0.2396 1.5 2dwc:A
14 8vxa:A 1139 95 0.0875 0.0202 0.2421 3.6 8vxc:A
15 8vxy:B 1161 95 0.0875 0.0198 0.2421 3.8
16 6tmf:C 193 56 0.0646 0.0881 0.3036 4.0
17 6sw9:Z 197 56 0.0684 0.0914 0.3214 4.6 5jb3:Z, 5jbh:Z, 6skf:Ac, 6skg:Ac, 6swc:Z, 6swe:Z, 6th6:Ac, 4v4n:BC, 4v6u:AC, 7zag:Z, 7zah:Z, 7zai:Z, 7zhg:Z
18 4x9m:A 384 30 0.0494 0.0339 0.4333 6.0 4x9n:A
19 7mfm:I 490 145 0.1483 0.0796 0.2690 6.0 7mfm:J, 7mft:I
20 3k57:A 782 140 0.1103 0.0371 0.2071 7.8 3k58:A, 3k59:A, 3k5l:A, 3k5m:A, 3maq:A
21 5hc9:A 425 36 0.0418 0.0259 0.3056 8.7 3h39:A, 3h39:B, 3h3a:A, 3h3a:B, 5hc9:B
22 4up7:A 529 64 0.0760 0.0378 0.3125 8.9 4up9:A, 4upa:A
23 6dtq:A 391 49 0.0494 0.0332 0.2653 9.9 6dtq:B, 6dtq:C, 6dtq:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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