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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVAIDLPYDKRTITAQIDDENYAGKLVSQAATYHNKLSEQETVEKSLDNPIGSDKLEELARGKHNIVIISSDHTRPVPSH
IITPILLRRLRSVAPDARIRILVATGFHRPSTHEELVNKYGEDIVNNEEIVMHVSTDDSSMVKIGQLPSGGDCIINKVAA
EADLLISEGFIESHFFAGFSGGRKSVLPGIASYKTIMANHSGEFINSPKARTGNLMHNSIHKDMVYAARTAKLAFIINVV
LDEDKKIIGSFAGDMEAAHKVGCDFVKELSSVPAIDCDIAISTNGGYPLDQNIYQAVKGMTAAEATNKEGGTIIMVAGAR
DGHGGEGFYHNLADVDDPKEFLDQAINTPRLKTIPDQWTAQIFARILVHHHVIFVSDLVDPDLITNMHMELAKTLDEAME
KAYAREGQAAKVTVIPDGLGVIVKASWSHPQFE

The query sequence (length=433) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5huq:A 433 433 1.0000 1.0000 1.0000 0.0 6c1w:A, 6c1w:B, 6c1w:C, 8ezf:B, 8ezh:B, 8ezi:B, 5huq:B
2 2yjg:A 418 421 0.5150 0.5335 0.5297 6.47e-159 2yjg:B
3 8tec:A 448 86 0.0600 0.0580 0.3023 0.56 8tee:A, 8tee:B
4 1r9d:A 786 67 0.0439 0.0242 0.2836 2.3 1r9d:B
5 1ksk:A 234 81 0.0531 0.0983 0.2840 5.8 1ksl:A, 1ksv:A
6 8e1u:A 1126 59 0.0393 0.0151 0.2881 7.6 8e1u:B, 8e1u:C, 8e1u:D, 8e1u:E, 8e1u:F, 8e1u:G, 8e1u:H
7 6twn:B 309 171 0.0831 0.1165 0.2105 9.0 5fzt:A, 6twn:A, 7v1a:A, 4w8p:A, 7zw4:A
8 6j03:A 200 49 0.0370 0.0800 0.3265 9.1 6a92:A, 6a92:B, 6a92:C, 6a92:D, 6adu:A, 6adu:B, 6adu:C, 6adu:D, 5yvk:A, 5yvp:A, 5yvp:B, 5yvp:C, 5yvp:D, 5z53:A, 5z53:B, 5z53:C, 5z53:D, 5zfj:A, 5zfj:B, 5zfj:C, 5zfj:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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