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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKS
ISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKY
PPTVGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEE

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rus:B 220 211 0.9951 0.9318 0.9716 4.14e-148 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
2 6rus:A 234 126 0.2379 0.2094 0.3889 9.07e-17 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
3 6rus:A 234 163 0.2621 0.2308 0.3313 3.72e-12 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
4 7yyk:A 114 122 0.2233 0.4035 0.3770 1.39e-13 1lsl:A
5 7yyk:A 114 52 0.1359 0.2456 0.5385 3.35e-12 1lsl:A
6 7yyk:A 114 102 0.1553 0.2807 0.3137 3.70e-07 1lsl:A
7 6ool:A 244 54 0.1165 0.0984 0.4444 8.81e-08
8 6ool:A 244 56 0.0922 0.0779 0.3393 0.43
9 6qig:A 581 54 0.1165 0.0413 0.4444 1.17e-07 3ghm:A, 3ghn:A, 3vn4:A
10 7za1:E 251 51 0.1068 0.0876 0.4314 2.12e-06 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
11 7za1:E 251 56 0.0874 0.0717 0.3214 3.1 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
12 3t5o:A 871 66 0.1262 0.0299 0.3939 2.24e-04
13 7r84:A 52 52 0.1068 0.4231 0.4231 4.41e-04 7r84:C, 7r84:D
14 7r84:A 52 60 0.1068 0.4231 0.3667 0.034 7r84:C, 7r84:D
15 7r84:A 52 29 0.0680 0.2692 0.4828 1.4 7r84:C, 7r84:D
16 8ckk:B 121 115 0.1699 0.2893 0.3043 0.001 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
17 4e0s:B 898 69 0.1262 0.0290 0.3768 0.002 7nyc:B, 7nyd:B
18 4a5w:B 871 69 0.1262 0.0299 0.3768 0.002
19 7nyc:C 809 51 0.0971 0.0247 0.3922 0.030 7nyd:C
20 7nyc:C 809 71 0.1019 0.0260 0.2958 0.42 7nyd:C
21 7nyc:D 487 52 0.1019 0.0431 0.4038 0.28 7nyd:D
22 7nyc:D 487 33 0.0631 0.0267 0.3939 3.9 7nyd:D
23 7r84:B 45 51 0.0874 0.4000 0.3529 0.46 7r85:A, 7r86:C
24 7r84:B 45 28 0.0680 0.3111 0.5000 1.8 7r85:A, 7r86:C
25 2ifw:A 206 42 0.0680 0.0680 0.3333 0.91 2ifr:A, 2ifw:B, 1s2k:A
26 7r86:D 40 37 0.0728 0.3750 0.4054 1.1
27 7r86:D 40 28 0.0680 0.3500 0.5000 1.5
28 6yjt:AAA 513 52 0.1019 0.0409 0.4038 1.3 8ce3:A, 6yjt:BBB, 6yju:AAA, 6yju:BBB, 6yjv:AAA, 6yjv:BBB, 5zic:B
29 3ojy:B 504 34 0.0680 0.0278 0.4118 1.5 8b0f:D
30 6yjs:BBB 486 52 0.1019 0.0432 0.4038 1.5 6yjs:AAA
31 5foe:B 435 51 0.0680 0.0322 0.2745 2.3 5foe:A
32 5foe:B 435 59 0.1068 0.0506 0.3729 2.9 5foe:A
33 5knk:B 324 54 0.0728 0.0463 0.2778 2.4
34 7nyd:E 484 35 0.0631 0.0269 0.3714 2.8 7nyc:E
35 8b0f:E 513 35 0.0631 0.0253 0.3714 3.3 3ojy:A
36 3gid:A 460 44 0.0728 0.0326 0.3409 3.4 3gid:B
37 3jrx:A 496 44 0.0728 0.0302 0.3409 3.6 5kkn:B, 5kkn:C
38 7nyd:G 413 53 0.0825 0.0412 0.3208 5.3 8de6:A, 8de6:C, 8de6:G, 7nyc:H, 7nyd:H
39 6dlw:A 460 53 0.0825 0.0370 0.3208 5.7 6dlw:B, 6dlw:C, 6dlw:D, 6dlw:E, 6dlw:F, 6dlw:G, 6dlw:H, 6dlw:I, 6dlw:J, 6dlw:K, 6dlw:L, 6dlw:M, 6dlw:N, 6dlw:O, 6dlw:P, 6dlw:Q, 6dlw:R, 6dlw:S, 6dlw:T, 6dlw:U, 6dlw:V

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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