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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STVSTLYGEVEPSLLEIAKQIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVEN
RMKALGISLIYQGQDDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVALRVCVADGHPLLAQRANYVTHIKGGHGA
VREVCDLILQARNELDV

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3n07:A 179 177 1.0000 0.9888 1.0000 4.39e-130 3n07:B, 3n07:C, 3n07:D
2 3hyc:A 181 174 0.5989 0.5856 0.6092 2.95e-76 3hyc:B, 3hyc:C, 3hyc:D, 3hyc:E, 3hyc:F, 3hyc:G, 3hyc:H, 3i6b:A, 3i6b:B, 3i6b:C, 3i6b:D, 2r8e:A, 2r8e:B, 2r8e:C, 2r8e:D, 2r8e:E, 2r8e:F, 2r8e:G, 2r8e:H, 2r8y:A, 2r8y:B, 2r8y:C, 2r8y:D, 2r8y:E, 2r8y:F, 2r8y:G, 2r8y:H, 2r8y:I, 2r8y:J, 2r8y:K, 2r8y:L, 2r8y:M, 2r8y:N, 2r8y:O, 2r8y:P, 2r8z:A, 2r8z:B, 2r8z:C, 2r8z:D, 2r8z:E, 2r8z:F, 2r8z:G, 2r8z:H, 2r8z:I, 2r8z:J, 2r8z:K, 2r8z:L, 2r8z:M, 2r8z:N, 2r8z:O, 2r8z:P
3 3n1u:A 182 174 0.4802 0.4670 0.4885 1.43e-52
4 3nrj:I 177 163 0.4011 0.4011 0.4356 3.73e-45 3nrj:A, 3nrj:B, 3nrj:C, 3nrj:D, 3nrj:E, 3nrj:F, 3nrj:G, 3nrj:H, 3nrj:J, 3nrj:K, 3nrj:L
5 4um7:A 175 159 0.4237 0.4286 0.4717 1.18e-43 4um5:A, 4um5:B, 4um5:C, 4um5:D, 4um7:B, 4um7:C, 4um7:D, 4ume:A, 4umf:A, 4umf:B, 4umf:C, 4umf:D
6 4hgp:A 179 159 0.3616 0.3575 0.4025 1.22e-39 1k1e:A, 1k1e:B, 1k1e:C, 1k1e:D, 1k1e:E, 1k1e:F, 1k1e:G, 1k1e:H, 1k1e:I, 1k1e:J, 1k1e:K, 1k1e:L
7 3e81:A 164 151 0.2938 0.3171 0.3444 9.75e-29 3e81:B, 3e81:D, 3e81:C, 3e84:A, 3e84:B, 3e84:C, 3e84:D, 3e8m:A, 3e8m:B, 3e8m:C, 3e8m:D, 4hgo:A, 4hgo:B, 4hgo:C, 4hgo:D, 4hgq:A, 4hgq:B, 4hgq:C, 4hgq:D, 4hgq:E, 4hgq:F, 4hgq:G, 4hgq:H, 4hgr:A, 4hgr:B, 4hgr:C, 4hgr:D, 4hgr:E, 4hgr:F, 4hgr:G, 4hgr:H
8 4hgn:A 165 155 0.2994 0.3212 0.3419 7.43e-28 4hgn:B, 4hgn:C, 4hgn:D
9 3mmz:D 174 155 0.2881 0.2931 0.3290 1.58e-23 3mmz:A, 3mmz:B, 3mmz:C
10 6tvo:A 1011 173 0.2260 0.0396 0.2312 0.064 2l1l:B
11 6gq3:A 509 46 0.1073 0.0373 0.4130 0.20 6gq3:B
12 3qm3:A 350 92 0.1469 0.0743 0.2826 0.66 3qm3:B, 3qm3:C, 3qm3:D, 3qm3:E, 3qm3:F, 3qm3:G, 3qm3:H
13 1rkq:A 271 45 0.0904 0.0590 0.3556 2.7 1rkq:B
14 2gk1:I 440 65 0.0904 0.0364 0.2462 2.8 2gk1:J, 2gk1:K, 2gk1:L
15 1nrw:A 285 72 0.1073 0.0667 0.2639 3.0
16 7xpg:A 463 43 0.0734 0.0281 0.3023 4.0 7xpg:B, 7xpg:C
17 8q4s:A 295 132 0.1695 0.1017 0.2273 5.7 7qpl:A
18 7cim:A 524 39 0.0791 0.0267 0.3590 6.7 7cig:A, 7cig:B, 7cii:A, 7cii:B, 7cij:A, 7cij:B, 7cim:B
19 6o38:A 573 49 0.1017 0.0314 0.3673 7.0 6o38:B, 6o38:C, 6o38:D, 6o38:E, 6o38:F
20 7oik:A 4426 85 0.1356 0.0054 0.2824 7.7 7oim:A, 6tax:A, 6tay:A
21 3cmd:B 188 61 0.0960 0.0904 0.2787 8.6 3cmd:A, 3g6n:A, 3g6n:B
22 7r0h:A 654 102 0.1299 0.0352 0.2255 8.9 3a1c:A, 3a1c:B, 3a1d:A, 3a1d:B, 3a1e:A, 3a1e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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