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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STTTKYIFVPIATIGCGKTTVFNTLNNLFPQWTHIQNNNISKKAKLKICDLTLLALEDDDQSVVLFDRNNSASRERRQIF
TTIDQKRDEHLDDTVDLKYIAINFIPEDLSEEELWDITYNRVIQRGDNHQSIKSQLDENLVESVMKGFIQRYQPINTSRS
PDDQFDHVIHLKLSKDENSLKSSLENVRIIIDDLVQNFPDLIKEKPADELINECFQKALDYKP

The query sequence (length=223) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6u05:A 413 222 0.9417 0.5085 0.9459 4.39e-149 6tzm:A, 6tzo:A, 6tzx:A, 6u00:B, 6u03:A, 5u32:A
2 8pj1:s 159 37 0.0583 0.0818 0.3514 0.066 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
3 3ai7:A 813 77 0.0987 0.0271 0.2857 0.81 3ai7:B, 3ai7:C, 3ai7:D, 3ai7:E, 3ai7:F, 3ai7:G, 3ai7:H, 7c8h:A, 7c8h:B, 7c8h:C, 7c8h:D, 7c8h:E, 7c8h:F, 7c8h:G, 7c8h:H, 7c8i:A, 7c8i:B, 7c8i:C, 7c8i:D, 7c8i:E, 7c8i:F, 7c8i:G, 7c8i:H, 8io6:A, 8io6:B, 8io6:C, 8io6:D, 8io6:E, 8io6:F, 8io6:G, 8io6:H, 8io7:A, 8io7:B, 6lxv:A, 6lxv:B, 6lxv:C, 6lxv:D, 6lxv:E, 6lxv:F, 6lxv:G, 6lxv:H
4 1ej8:A 140 75 0.1076 0.1714 0.3200 1.2
5 8vxa:A 1139 151 0.1570 0.0307 0.2318 2.1 8vxc:A
6 8vxy:B 1161 151 0.1570 0.0301 0.2318 2.6
7 3ahc:A 802 65 0.0807 0.0224 0.2769 8.5 3ahd:A, 3ahe:A, 3ahf:A, 3ahg:A, 3ahh:A, 3ahi:A, 3ahj:A
8 2v1u:A 382 54 0.0583 0.0340 0.2407 8.6
9 4y4m:F 262 23 0.0493 0.0420 0.4783 8.6 4y4m:A, 4y4m:B, 4y4m:C, 4y4m:D, 4y4m:E, 4y4m:G, 4y4m:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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