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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
STQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG
VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHAHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPG
YFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI
NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLM
PGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAP
RWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN
LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE
QPLEILRTLHSFDPCLACSTH

The query sequence (length=581) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a4f:L 581 581 1.0000 1.0000 1.0000 0.0 5a4f:M, 5a4i:L, 5a4i:M, 5a4m:L, 5a4m:M, 5adu:L, 5adu:M, 6fpi:L, 6fpi:M, 6fpo:L, 6fpo:M, 6fpw:L, 6fpw:M, 6g7r:L, 6g7r:M, 6g94:L, 6g94:M, 6g94:J, 6g94:K, 6gal:L, 6gal:M, 4gd3:L, 4gd3:M, 4gd3:J, 4gd3:K, 5jrd:L, 5jrd:M, 5lmm:L, 5lmm:M, 5lry:L, 5lry:M, 6rp2:L, 6rp2:M, 4ue3:LLL, 4ue3:MMM, 3uqy:L, 3uqy:M, 3usc:L, 3usc:M, 3use:L, 3use:M
2 4c3o:A 583 581 0.6678 0.6655 0.6678 0.0 4c3o:C, 4c3o:E
3 3ayx:A 595 590 0.5886 0.5748 0.5797 0.0 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
4 4iub:L 602 604 0.5972 0.5764 0.5745 0.0 5d51:L, 4iuc:L, 4iud:L, 5mdj:L, 5mdk:L, 5mdl:L, 7odg:L, 7odh:L, 8pou:L, 8pov:L, 8pow:L, 8pox:L, 8poz:L, 3rgw:L, 4ttt:L
5 3myr:D 561 568 0.5215 0.5401 0.5335 0.0 3myr:B, 3myr:F, 3myr:H
6 6ehq:L 551 577 0.4217 0.4446 0.4246 4.44e-158 6ehq:M, 6ehs:L, 6ehs:M, 6en9:L, 6en9:M, 6g7m:L, 6g7m:M, 6gam:L, 6gam:M, 6gan:L, 6gan:M, 7nem:L, 7nem:M, 6syo:LLL, 6syo:MMM, 6syx:LLL, 6syx:MMM, 6szd:LLL, 6szd:MMM, 6szk:LLL, 6szk:MMM, 7vxq:A, 7vxq:C, 5xvb:L, 5xvb:M, 5xvc:L, 5xvc:M, 5xvd:L, 5xvd:M
7 3cur:H 545 573 0.4251 0.4532 0.4311 1.10e-149 3cur:I, 3cur:J, 3cus:Q, 3cus:R, 3cus:S, 1frf:L, 3h3x:Q, 3h3x:R, 3h3x:S, 4ucq:Q, 4ucq:R, 4ucq:S, 4ucw:Q, 4ucw:R, 4ucw:S, 4ucx:Q, 4ucx:R, 4ucx:S, 4ud2:S, 4ud2:Q, 4ud2:R, 4ud6:Q, 4ud6:R, 4ud6:S, 4ue2:Q, 4ue2:R, 4ue2:S, 4ue6:R, 4ue6:Q, 4ue6:S, 4ueq:Q, 4ueq:R, 4ueq:S, 4ueq:T, 4ueq:U, 4ueq:V, 4uew:Q, 4uew:R, 4uew:S, 4upe:Q, 4upe:R, 4upe:S, 4upv:Q, 4upv:R, 4uql:Q, 4uql:R, 4uqp:Q, 4uqp:R, 4urh:Q, 4urh:S, 4urh:R, 1yqw:Q, 1yqw:R, 1yqw:S, 1yrq:H, 1yrq:I, 1yrq:J, 1yrq:K, 1yrq:M, 1yrq:N
8 1frv:B 530 570 0.4165 0.4566 0.4246 7.90e-149 1frv:D, 2frv:L, 2frv:B, 2frv:D, 2frv:F, 2frv:H, 2frv:J, 1yq9:H, 1yq9:I
9 1h2a:L 534 567 0.4079 0.4438 0.4180 8.36e-146 1h2r:L, 4u9h:L, 4u9i:L, 1ubh:L, 1ubj:L, 1ubk:L, 1ubl:L, 1ubm:L, 1ubo:L, 1ubr:L, 1ubt:L, 1ubu:L, 8w6x:L, 1wuh:L, 1wui:L, 1wuj:L, 1wuk:L, 1wul:L, 5xle:L, 5xlf:L, 5xlg:L, 5xlh:L, 5y4n:L
10 1e3d:B 537 567 0.4131 0.4469 0.4233 9.50e-146 1e3d:D
11 6rtp:B 484 569 0.3133 0.3760 0.3199 4.66e-83 5jsh:B, 5jsk:B, 5jsu:B, 5jsy:B, 5jt1:B, 6ru9:B, 6ruc:B, 2wpn:B, 6z7r:B, 6z7r:D, 6z8j:B, 6z8j:D, 6z8m:B, 6z8o:B, 6z8o:D, 6z9g:B, 6z9g:D, 6z9g:F, 6z9g:H, 6z9o:B, 6za1:B, 3ze6:B, 3ze7:B, 3ze8:B, 3ze9:B, 3zea:B
12 4kl8:L 489 573 0.3133 0.3722 0.3176 9.72e-74 1cc1:L, 4kl8:M, 4kn9:L, 4kn9:M, 4ko1:L, 4ko1:M, 4ko2:L, 4ko2:M, 4ko3:L, 4ko3:M, 4ko4:L, 4ko4:M
13 8dqv:A 513 595 0.2857 0.3236 0.2790 6.88e-46 8dqv:C, 7utd:A, 7utd:C, 7utd:E, 7utd:G, 7utd:I, 7utd:K, 7utd:M, 7utd:O, 7uur:C, 7uur:F, 7uus:A, 7uus:C, 7uus:E, 7uus:G, 7uus:I, 7uus:K, 7uus:M, 7uus:O
14 5aa5:G 561 619 0.2788 0.2888 0.2617 6.51e-40 5aa5:C, 5aa5:E, 5aa5:K, 5aa5:I, 5aa5:L
15 5odc:F 447 275 0.1205 0.1566 0.2545 1.66e-21 5odc:L, 5odh:F, 5odh:L, 5odi:F, 5odi:L, 5odq:F, 5odq:L, 5odr:F, 5odr:L
16 5odc:F 447 88 0.0551 0.0716 0.3636 2.22e-04 5odc:L, 5odh:F, 5odh:L, 5odi:F, 5odi:L, 5odq:F, 5odq:L, 5odr:F, 5odr:L
17 7t2r:D 447 575 0.2186 0.2841 0.2209 9.40e-21 7t2r:I, 7t30:D, 7t30:I
18 4ci0:A 385 111 0.0706 0.1065 0.3694 8.68e-18 4omf:A
19 4ci0:A 385 191 0.0826 0.1247 0.2513 2.09e-08 4omf:A
20 5xf9:D 455 130 0.0740 0.0945 0.3308 1.63e-15 5xf9:H, 5xfa:D, 5xfa:H
21 5xf9:D 455 85 0.0516 0.0659 0.3529 4.18e-04 5xf9:H, 5xfa:D, 5xfa:H
22 6qgr:A 437 103 0.0585 0.0778 0.3301 4.94e-13 6qgt:A, 6qii:A
23 6qgr:A 437 77 0.0499 0.0664 0.3766 2.44e-06 6qgt:A, 6qii:A
24 7z0s:E 532 96 0.0516 0.0564 0.3125 1.57e-09 7z0t:E
25 7z0s:E 532 134 0.0602 0.0658 0.2612 2.1 7z0t:E
26 6cfw:L 374 89 0.0448 0.0695 0.2921 4.70e-07
27 6cfw:L 374 81 0.0413 0.0642 0.2963 0.16
28 7p7k:C 568 135 0.0482 0.0493 0.2074 0.001 7p7e:C
29 7p63:C 589 94 0.0379 0.0374 0.2340 0.004 7nyr:D, 7nyu:D, 7nz1:D, 7p64:C, 7p69:C, 7p7c:C, 7p7j:C, 7p7l:C, 7p7m:C, 7z7r:C, 7z7s:C, 7z7t:C, 7z7v:C, 7z80:C, 7z83:C, 7z84:C, 7zc5:C, 7zci:C
30 6i0d:4 384 93 0.0413 0.0625 0.2581 0.010 6i0d:E, 6i1p:E, 3i9v:4, 3iam:4, 3ias:4, 3ias:D, 3ias:M, 3ias:V, 3m9s:4, 3m9s:D, 6q8o:4, 6q8o:E, 6q8w:4, 6q8w:E, 6q8x:4, 6q8x:E, 2ybb:4
31 7zmb:C 441 93 0.0327 0.0431 0.2043 0.61 7zm7:C, 7zmg:C
32 8iuf:S2 394 93 0.0361 0.0533 0.2258 1.2 8j9h:S2, 8j9i:S2, 8j9j:S2
33 8b9z:D 430 82 0.0310 0.0419 0.2195 1.6 8esz:S2
34 4z5p:A 388 126 0.0516 0.0773 0.2381 2.0 4z5p:B
35 2l47:A 165 67 0.0327 0.1152 0.2836 2.5 2ar3:A, 2ar3:B, 2ar3:C, 1yb0:A, 1yb0:B, 1yb0:C
36 6rfr:C 438 93 0.0310 0.0411 0.1935 3.0 7o6y:C, 7o71:C, 6rfq:C, 6rfs:C, 6y79:C, 6yj4:D
37 3vnx:A 195 43 0.0258 0.0769 0.3488 5.2
38 4bc0:A 542 138 0.0534 0.0572 0.2246 6.7 4a16:A, 4a16:B, 4a16:C, 4a16:D, 4a23:A, 4a23:B, 4ara:A, 4ara:B, 4arb:A, 4arb:B, 4b7z:A, 4b7z:B, 4b80:A, 4b80:B, 4b81:A, 4b81:B, 4b82:A, 4b82:B, 4b83:A, 4b83:B, 4b84:A, 4b84:B, 4b85:A, 4b85:B, 4bc0:B, 4bc0:C, 4bc0:D, 4bc1:A, 4bc1:B, 4bc1:C, 4bc1:D, 4btl:A, 4btl:B, 2c0p:A, 2c0p:B, 2c0q:A, 2c0q:B, 5dtj:A, 5dtj:B, 5ehn:A, 5ehn:B, 5ehq:A, 5ehq:B, 5ehz:A, 5ehz:B, 5eia:A, 5eia:B, 5eie:A, 5eie:B, 5eih:A, 5eih:B, 5fkj:A, 5fkj:D, 5fkj:B, 5fkj:C, 5foq:A, 5foq:B, 5fpp:A, 5fpp:B, 6fsd:A, 6fsd:B, 6fse:A, 6fse:B, 5fum:A, 5fum:B, 2gyu:A, 2gyu:B, 2gyv:A, 2gyv:B, 2gyw:A, 2gyw:B, 2h9y:A, 2h9y:B, 2ha0:A, 2ha0:B, 2ha2:A, 2ha2:B, 2ha3:A, 2ha3:B, 2ha4:A, 2ha4:B, 2ha5:A, 2ha5:B, 2ha6:A, 2ha6:B, 2ha7:A, 2ha7:B, 1j06:A, 1j06:B, 1j07:A, 1j07:B, 2jey:A, 2jey:B, 2jez:A, 2jez:B, 2jf0:A, 2jf0:B, 1maa:A, 1maa:B, 1maa:C, 1maa:D, 1n5m:A, 1n5m:B, 1n5r:A, 8orc:A, 8orc:B, 5ov9:A, 5ov9:B, 1q83:A, 1q83:B, 1q84:A, 1q84:B, 7qak:A, 7qak:B, 7qb4:A, 7qb4:B, 7qyn:A, 7qyn:B, 7r02:A, 7r02:B, 7r0a:A, 7r0a:B, 7r2f:A, 7r2f:B, 7r3c:A, 7r3c:B, 7r4e:A, 7r4e:B, 6td2:A, 6td2:B, 2whp:A, 2whp:B, 2whq:A, 2whq:B, 2whr:A, 2whr:B, 2wls:A, 2wls:B, 2wu3:A, 2wu3:B, 2wu4:A, 2wu4:B, 2xud:A, 2xuf:A, 2xuf:B, 2xug:A, 2xug:B, 2xuh:A, 2xuh:B, 2xui:A, 2xui:B, 2xuj:A, 2xuj:B, 2xuk:A, 2xuk:B, 2xuo:A, 2xuo:B, 2xup:A, 2xup:B, 2xuq:A, 2xuq:B, 3zlu:B, 3zlv:A, 3zlv:B
39 5ze3:B 443 46 0.0241 0.0316 0.3043 7.0 5ze3:A
40 6j9f:C 1296 77 0.0396 0.0177 0.2987 7.1
41 6j9e:C 1288 77 0.0396 0.0179 0.2987 7.2
42 8ki1:A 181 56 0.0310 0.0994 0.3214 8.5 8ki0:A, 8ki0:B, 8ki1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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