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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STPKDIWGRYMAKFDLAKSHGSGIYVDLGGTERVGATQHRMPTGKCPVMGKVINLGNNADFLNRISAENPQDRGLAFPDT
ILSPVSAADLVRWGYDGNDVANCAEYAGNIIPASDTATKYRYPFVYDAKEEMCHILFTPMQYNRTSSLLCMEPMKSGIDA
HLYYGSSRVDKKWEENCPMYPVKDAIFGRGANGSCVAIESAFEEFTRDAEECSALMFENAAADLESAKNSKGVGMNWANY
DSNTGLCRVIEETPNCLIIDAGSFAMTAVGSPLEQDAVPFPCDIVTNGYIEPRPRSRHIFEVTTALSREALKCSKYVHEK
YSESCGTYYYCSEEKPSSW

The query sequence (length=339) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4apm:A 339 339 1.0000 1.0000 1.0000 0.0
2 3srj:A 298 285 0.3186 0.3624 0.3789 5.51e-57 3sri:A, 3srj:B, 4z09:A, 4z0d:A, 4z0e:A, 4z0f:A
3 6n7q:A 266 276 0.3038 0.3872 0.3732 6.92e-52
4 6n87:A 314 311 0.3215 0.3471 0.3505 1.31e-50
5 4yiv:A 374 312 0.2861 0.2594 0.3109 1.22e-32
6 5xyu:F 67 21 0.0324 0.1642 0.5238 4.2
7 1xfu:A 735 35 0.0383 0.0177 0.3714 5.6 1k90:A, 1k90:C, 1lvc:A, 1lvc:C, 1pk0:A, 1pk0:C, 1s26:A, 1s26:C, 1sk6:C, 1xfu:B, 1xfu:C, 1xfu:D, 1xfu:E, 1xfu:F, 1xfv:A, 1xfv:B, 1xfv:C, 1xfv:D, 1xfv:E, 1xfv:F, 1xfw:A, 1xfw:B, 1xfw:C, 1xfw:D, 1xfw:E, 1xfw:F, 1xfx:A, 1xfx:B, 1xfx:C, 1xfx:D, 1xfx:E, 1xfx:F, 1xfy:A, 1xfy:B, 1xfy:C, 1xfy:D, 1xfy:E, 1xfy:F, 1xfz:A, 1xfz:B, 1xfz:C, 1xfz:D, 1xfz:E, 1xfz:F, 1y0v:A, 1y0v:B, 1y0v:C, 1y0v:D, 1y0v:E, 1y0v:F
8 6dzi:n 96 21 0.0324 0.1146 0.5238 7.1 6dzk:F, 8fr8:g, 7kgb:f, 7msc:f, 7msh:f, 7msm:f, 7msz:f, 7mt2:f, 7mt3:f, 7mt7:f, 5o5j:F, 5o61:BF, 7sfr:f, 5v93:f, 8v9j:f, 8v9k:f, 8v9l:f, 8whx:g, 8wi7:g, 8wi9:g, 8wib:g, 8wid:g, 8wif:g, 5zeb:f, 5zep:f, 5zeu:f
9 2uz9:A 444 53 0.0472 0.0360 0.3019 7.5 4aql:A, 3e0l:A, 3e0l:B
10 1sk6:A 481 35 0.0383 0.0270 0.3714 7.6 1k90:B, 1pk0:B, 1s26:B
11 1sk6:B 454 35 0.0383 0.0286 0.3714 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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