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BioLiP
>protein
STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF
LVFKTA

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ds1:A 86 86 1.0000 1.0000 1.0000 4.17e-59 4ds1:C, 4ht6:A, 4ht6:C, 4ht6:E
2 4d07:A 92 84 0.4651 0.4348 0.4762 5.35e-30 3brl:A, 1cmi:A, 1cmi:B, 7cnu:A, 7d35:A, 3dvp:A, 3dvp:B, 5e0l:A, 5e0m:A, 3e2b:A, 1f95:A, 1f95:B, 1f96:A, 1f96:B, 3fm7:E, 3fm7:F, 3glw:A, 6gzj:A, 6gzl:A, 7k3j:A, 7k3j:G, 7k3j:I, 7k3j:K, 7k3j:C, 7k3j:E, 7k3k:A, 7k3l:A, 2p2t:A, 2pg1:A, 2pg1:B, 2pg1:C, 2pg1:D, 4qh7:A, 4qh7:B, 4qh7:E, 4qh7:F, 4qh8:A, 4qh8:B, 2xqq:A, 2xqq:C, 2xqq:B, 2xqq:D, 7y8w:A, 7y8w:B, 7y8w:D, 7y8w:C, 7y8w:G, 7y8w:H, 7y8w:J, 7y8w:I, 7y8w:M, 7y8w:N, 7y8w:Q, 7y8w:R, 3zke:A, 3zke:C, 3zke:E, 3zke:G, 3zke:I, 3zke:K, 3zkf:A, 3zkf:C, 3zkf:E, 3zkf:K, 3zkf:G, 3zkf:I
3 2qmm:A 195 20 0.1163 0.0513 0.5000 0.62 2qmm:B
4 5k0y:T 329 38 0.1628 0.0426 0.3684 1.9
5 8jwf:A 1204 25 0.1047 0.0075 0.3600 3.1 8jwg:A, 8jwi:A
6 7d8m:A 451 44 0.1163 0.0222 0.2273 3.4
7 8xmc:B 1082 43 0.1395 0.0111 0.2791 4.2 7eu1:B, 8xmb:B
8 6nd4:H 834 45 0.1860 0.0192 0.3556 4.8 7ajt:UQ, 7aju:UQ, 7d4i:AG, 7d5s:AG, 7d5t:AG, 7d63:AG, 6ke6:AG, 6lqp:AG, 6lqq:AG, 6lqr:AG, 6lqs:AG, 6lqt:AG, 6lqu:AG, 6lqv:AG, 7suk:LH, 5wlc:LH, 6zqa:UQ, 6zqb:UQ, 6zqc:UQ, 6zqd:UQ, 6zqe:UQ
9 1qor:A 326 67 0.1860 0.0491 0.2388 4.9 1qor:B
10 2v4j:B 380 38 0.1279 0.0289 0.2895 8.1 2v4j:E
11 2yy5:B 346 44 0.1512 0.0376 0.2955 8.8 2yy5:A, 2yy5:C, 2yy5:D
12 6j9f:D 1215 32 0.1279 0.0091 0.3438 9.2 6j9e:D
13 6j7b:A 249 24 0.0930 0.0321 0.3333 9.3 6j4u:A, 6j8f:B, 6j8n:B, 6j8n:D, 6j8o:B, 6j91:B, 6j9h:B, 6j9h:D, 6k81:A, 6lpg:A, 6nvq:C, 6ocg:A, 6och:A, 6och:C
14 2zah:C 331 72 0.2209 0.0574 0.2639 10.0 2zah:A, 2zah:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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