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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
STLPHVAFYISVNRPISDEECTFDNSWLWKDEKGSRPFCKDANISLIYRVNLERSLQYGIVGSATPNAKIVRISLDDDSS
GAGIHLNDQLSYRRFGASYTTLDAYFREWSTDAIAQDYRFVFKTSNNKAEILETFPIDNLNVKYEKRKQSGFELGVTGGA
EVSEDGPKAKLEARASITQSRWLTYNTQDYRVERNAKNAQTVSFTWNRQEYATAESLLNRSTDALWVDTYPVDVNRISPL
SYASFVPKMDVIYKASDTETGSTDFIIDSSVNIRPIYNGAYKHYYVVGAHQSYHGFENSPRRRITKSASFTVDWDHPVFT
GGRPVNLQLASFNNRCVQVDAQSRLTANTCDDQQSAQSFIYDQLGRYVSASNTELCLDGAALDVLQTCNQNLTQRWEWRK
NTDELTNVYSGESLGHDKQTGELGLYASSNDAVSLRTITAYTNVFNVQ

The query sequence (length=448) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1xez:A 663 447 0.9107 0.6154 0.9128 0.0 4gx7:A, 4gx7:B, 4gx7:D, 4gx7:C, 4gx7:E, 4gx7:F, 8jc7:A, 8jc7:B, 8jc7:C, 8jc7:D, 8jc7:E, 8jc7:F, 8jc7:G
2 3rys:A 335 74 0.0446 0.0597 0.2703 5.4 3rys:B
3 8oie:C 456 246 0.1161 0.1140 0.2114 5.7 8oie:H, 8pbb:B, 8pbb:D
4 4ueg:B 249 32 0.0268 0.0482 0.3750 6.4 4ueg:A
5 8k1l:A 979 194 0.0938 0.0429 0.2165 8.6
6 4okm:A 346 77 0.0446 0.0578 0.2597 9.8 4okm:B, 4okm:C, 4okz:A, 4okz:B, 4okz:C, 4okz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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