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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STHEPLEVLKEETVNRHRAIVSVMEALEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRT
YLFTEGPITAA

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5da5:A 91 91 0.9890 0.9890 0.9890 1.17e-61 5da5:J, 5da5:B, 5da5:C, 5da5:D, 5da5:E, 5da5:F, 5da5:H, 5da5:G, 5da5:I, 5da5:K, 5da5:T, 5da5:L, 5da5:M, 5da5:N, 5da5:O, 5da5:P, 5da5:R, 5da5:Q, 5da5:S, 5da5:U, 5da5:d, 5da5:V, 5da5:W, 5da5:X, 5da5:Y, 5da5:Z, 5da5:b, 5da5:a, 5da5:c, 5l89:L, 5l89:M, 5l89:P, 5l89:R, 5l89:U, 5l89:V, 5l8b:A, 5l8b:J, 5l8b:B, 5l8b:C, 5l8b:D, 5l8b:E, 5l8b:H, 5l8b:I, 5l8b:K, 5l8b:T, 5l8b:L, 5l8b:M, 5l8b:O, 5l8b:N, 5l8b:P, 5l8b:R, 5l8b:Q, 5l8b:S, 5l8b:U, 5l8b:d, 5l8b:V, 5l8b:W, 5l8b:X, 5l8b:Y, 5l8b:b, 5l8b:c, 5l8f:B, 5l8f:C, 5l8f:D, 5l8f:F, 5l8f:H, 5l8f:I, 5l8f:G, 5l8g:A, 5l8g:J, 5l8g:B, 5l8g:C, 5l8g:E, 5l8g:D, 5l8g:I, 5l8g:G, 5l8g:F, 5l8g:H, 5l8g:K, 5l8g:L, 5l8g:M, 5l8g:N, 5l8g:O, 5l8g:P, 5l8g:R, 5l8g:S, 5l8g:Q, 5l8g:T, 5l8g:U, 5l8g:d, 5l8g:V, 5l8g:W, 5l8g:X, 5l8g:Y, 5l8g:b, 5l8g:Z, 5l8g:a, 5l8g:c, 6suw:A, 6suw:B, 6suw:C, 6suw:D, 6suw:E, 6suw:F, 6suw:G, 6suw:I, 6suw:H, 6suw:J, 6suw:K, 6suw:L, 6suw:M, 6suw:N, 6suw:O, 6suw:P, 6suw:Q, 6suw:R, 6suw:S, 6suw:T, 6suw:U, 6suw:V, 6suw:W, 6suw:X, 6suw:Y, 6suw:Z, 6suw:a, 6suw:b, 6suw:c, 6suw:d, 6sv1:A, 6sv1:B, 6sv1:C, 6sv1:D, 6sv1:E, 6sv1:F, 6sv1:G, 6sv1:H, 6sv1:I, 6sv1:J, 6sv1:K, 6sv1:L, 6sv1:M, 6sv1:N, 6sv1:O, 6sv1:P, 6sv1:Q, 6sv1:R, 6sv1:S, 6sv1:T, 6sv1:U, 6sv1:V, 6sv1:W, 6sv1:X, 6sv1:Y, 6sv1:Z, 6sv1:a, 6sv1:b, 6sv1:c, 6sv1:d
2 7s8t:J 83 63 0.2747 0.3012 0.3968 1.33e-05 7s8t:A, 7s8t:E, 7s8t:F, 7s8t:H, 7s8t:G, 7s8t:I
3 7s5k:I 68 52 0.1978 0.2647 0.3462 4.88e-04 7s5c:A, 7s5c:B, 7s5c:E, 7s5c:F, 7s5c:G, 7s5c:H, 7s5c:I, 7s5c:J, 7s5c:C, 7s5c:D, 7s5k:A, 7s5k:B, 7s5k:F, 7s5k:E, 7s5k:G, 7s5k:H, 7s5k:J, 7s5k:C, 7s5k:D
4 6yuf:D 1272 57 0.1978 0.0142 0.3158 0.27
5 6s1y:A 595 47 0.1758 0.0269 0.3404 0.82 6s1z:A
6 3m6a:A 496 56 0.2088 0.0383 0.3393 2.5 3m6a:B, 3m6a:C, 3m6a:D, 3m6a:E, 3m6a:F
7 4emj:A 406 28 0.1319 0.0296 0.4286 2.8 3ef6:A, 4emi:A
8 6lkx:A 441 56 0.1868 0.0385 0.3036 3.7 6jdr:A, 6jds:A, 6jdu:A, 6lkx:B
9 2e33:A 175 58 0.2088 0.1086 0.3276 3.8
10 7ugh:A 436 21 0.1099 0.0229 0.4762 4.3 7ugh:B
11 5n5e:e 98 70 0.2088 0.1939 0.2714 6.9 5n5e:K, 5n5e:A, 5n5e:Z, 5n5e:B, 5n5e:Y, 5n5e:C, 5n5e:H, 5n5e:D, 5n5e:J, 5n5e:E, 5n5e:W, 5n5e:F, 5n5e:N, 5n5e:G, 5n5e:I, 5n5e:L, 5n5e:V, 5n5e:M, 5n5e:O, 5n5e:P, 5n5e:R, 5n5e:Q, 5n5e:d, 5n5e:T, 5n5e:U, 5n5e:X, 5n5e:b, 5n5e:a, 5n5e:c
12 3dpm:A 522 53 0.1758 0.0307 0.3019 7.3 3dpm:B
13 5nx5:A 287 71 0.1868 0.0592 0.2394 8.2
14 1b71:A 191 53 0.1209 0.0576 0.2075 8.6 1dvb:A, 1jyb:A, 1lkm:A, 1lko:A, 1lkp:A, 1qyb:A, 1ryt:A, 1s2z:A, 1s30:A
15 2a1u:A 315 26 0.1099 0.0317 0.3846 8.9 2a1t:R, 1efv:A
16 6i7p:A 883 55 0.1758 0.0181 0.2909 9.0 5goz:A, 5goz:B, 5goz:C, 5gp1:A, 5gp1:B, 5gp1:C, 6i7p:B, 6i7p:C, 6i7p:D, 6i7p:E, 6i7p:F, 5kqr:A, 5kqs:A, 5m2x:A, 5m2x:B, 5m2x:C, 5m2x:D, 5m2x:E, 5m2x:F, 5m2z:A, 5m2z:C, 5m2z:B, 5m2z:D, 5m2z:E, 5m2z:F, 5m5b:A, 5m5b:B, 5mrk:A, 5mrk:B, 5nju:A, 5nju:B, 5njv:A, 5njv:B, 5njv:C, 5njv:D, 8pem:A, 5tfr:A, 5tfr:B, 5tmh:A, 5tmh:B, 5u0b:A, 5u0b:B, 5u0c:A, 5u0c:B, 5u0c:C, 5u0c:D, 5u0c:E, 5u0c:F, 5u0c:G, 5u0c:H, 5ulp:A, 5ulp:B, 6ux2:B, 5vim:A, 5vim:B, 6wcz:B, 5wxb:A, 5wz1:A, 5wz1:B, 5wz1:C, 5wz1:D, 5wz1:E, 5wz1:F, 5wz1:G, 5wz1:H, 5wz2:A, 5wz2:B, 5wz2:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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