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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
STGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKEVVLYQFKDYE
AAKLYKKQLKVELDRSKKLIEKALSDNF

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dpd:B 117 115 1.0000 0.9231 0.9391 7.88e-71 2dpd:A, 2dpu:A, 2efw:A, 2efw:B, 2efw:F, 2efw:G, 1f4k:A, 1f4k:B
2 1ee9:A 317 104 0.2870 0.0978 0.2981 0.35
3 1q0d:A 117 32 0.1204 0.1111 0.4062 0.61 1q0d:B, 1q0d:C, 1q0d:D, 1q0d:E, 1q0d:F, 1q0d:G, 1q0d:H, 1q0d:I, 1q0d:J, 1q0d:K, 1q0d:L, 1q0f:A, 1q0f:B, 1q0f:C, 1q0f:D, 1q0f:E, 1q0f:F, 1q0f:G, 1q0f:H, 1q0f:I, 1q0f:J, 1q0f:K, 1q0f:L, 1q0g:A, 1q0g:B, 1q0g:C, 1q0g:D, 1q0g:E, 1q0g:F, 1q0g:G, 1q0g:H, 1q0g:I, 1q0g:J, 1q0g:K, 1q0g:L, 1q0k:A, 1q0k:B, 1q0k:C, 1q0k:D, 1q0k:E, 1q0k:F, 1q0k:G, 1q0k:I, 1q0k:H, 1q0k:J, 1q0k:K, 1q0k:L, 1q0m:A, 1q0m:B, 1q0m:C, 1q0m:D, 1q0m:E, 1q0m:F
4 5zi8:A 104 56 0.1389 0.1442 0.2679 0.90 7wh4:A, 7wh4:B, 5zhv:A, 5zhv:B, 5zi8:B
5 7tui:B 2033 43 0.1296 0.0069 0.3256 1.5 6u5v:B, 6u5w:B
6 3g4x:A 117 30 0.1204 0.1111 0.4333 1.6 3g4x:B, 3g4x:C, 3g4z:A, 3g4z:B, 3g4z:C, 3g50:A, 3g50:C, 1t6u:A, 1t6u:B, 1t6u:C, 1t6u:D, 1t6u:E, 1t6u:F, 1t6u:G, 1t6u:H, 1t6u:I, 1t6u:J, 1t6u:K, 1t6u:L
7 2jg1:A 318 41 0.1481 0.0503 0.3902 1.9 2jg1:B, 2jg1:C, 2jg1:D, 2jgv:B, 2jgv:D
8 3wgv:B 303 34 0.1111 0.0396 0.3529 1.9 7d92:B, 7d93:D, 7d94:D, 7ddf:B, 7ddf:D, 7ddh:B, 7ddh:D, 7ddk:B, 7ddk:D, 7ddl:B, 7ddl:D, 7e1z:B, 7e20:B, 7e21:B, 4hqj:B, 4hqj:D, 4hyt:B, 4hyt:D, 8jbk:B, 8jbk:D, 8jbl:B, 8jbl:D, 8jbm:D, 3kdp:B, 3kdp:D, 4ret:B, 3wgv:D, 7wys:B, 7wys:D, 7wyt:D, 4xe5:B
9 2wjy:A 773 104 0.2407 0.0336 0.2500 4.1 2gjk:A, 2gk6:A, 2gk6:B, 2gk7:A, 8rxb:E, 8rxb:A, 8rxb:D, 8rxb:I, 8rxb:L, 8rxb:P, 2wjv:A, 2wjv:B, 2xzo:A
10 3g5s:A 424 19 0.1111 0.0283 0.6316 4.2 3g5q:A, 3g5r:A
11 3pzl:B 293 45 0.1389 0.0512 0.3333 5.4 3pzl:A, 3pzl:C
12 5gtb:A 130 73 0.1852 0.1538 0.2740 6.9
13 7ena:PA 1475 34 0.1111 0.0081 0.3529 7.9 7b0y:A, 8b3d:A, 8b3f:A, 7enc:PA, 6gmh:A, 6gml:A, 8gxq:PA, 8gxs:PA, 7lbm:A, 5oik:A, 7oo3:A, 7oob:A, 7oop:A, 7opc:A, 7opd:A, 8p4a:A, 8p4b:A, 8p4c:A, 8p4d:A, 8p4e:A, 8p4f:A, 8s51:A, 8s52:A, 8s54:A, 8s55:A, 8uha:A, 8uhd:A, 8uis:A, 8w8e:A, 8w8f:A, 7ycx:1
14 6wmp:D 1159 40 0.1296 0.0121 0.3500 7.9 6wmr:D, 6wmt:D
15 7byw:A 108 34 0.1019 0.1019 0.3235 8.0 7byw:B
16 2iml:D 197 48 0.1204 0.0660 0.2708 8.9 2iml:A
17 6o9l:A 1476 34 0.1111 0.0081 0.3529 9.2 8a40:A, 8bvw:A, 8byq:A, 8bz1:A, 7edx:o, 7eg7:o, 7eg8:o, 7eg9:o, 7ega:o, 7egb:o, 7egc:o, 6exv:A, 5flm:A, 5iy6:A, 5iy7:A, 5iy8:A, 5iy9:A, 5iya:A, 5iyb:A, 5iyc:A, 5iyd:A, 7nvr:A, 7nvs:A, 7nvt:A, 7nvu:A, 7nvy:A, 7nvz:A, 7nw0:A, 8s5n:A, 8wak:o, 8wal:o, 8wan:o, 8wao:o, 8wap:o, 8waq:o, 8war:o, 8was:o, 8wat:o, 8wau:o, 8wav:o, 8waw:o, 8wax:o, 8way:o, 8waz:o, 8wb0:o, 6xre:A, 7zwd:A, 7zx7:A, 7zx8:A
18 5yho:A 238 33 0.1019 0.0462 0.3333 9.7 6inb:A, 6inc:A, 6j92:A, 6j92:B, 5yho:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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