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BioLiP
>protein
STEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPALEPVRSSLRLLNASAYRLQSECRKTV
PPEPVDFQLLTQQVIQCAYDIAKAAKQLVTITT

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6jmu:A 127 116 1.0000 0.8898 0.9741 3.59e-77 6iui:B, 6iui:A, 6jmu:B
2 8a0m:B 964 59 0.1593 0.0187 0.3051 5.0
3 5hp8:A 108 91 0.2655 0.2778 0.3297 6.2 5hp8:B, 5hp8:C
4 4f2n:B 210 34 0.0973 0.0524 0.3235 7.3 4f2n:A, 4f2n:C, 4f2n:D, 4f2n:E, 4f2n:F, 4f2n:G, 4f2n:H, 4f2n:I, 4f2n:J, 4f2n:K, 4f2n:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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