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BioLiP
>protein
SSYPIGAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRGQTIKGKPSGRAVLSAEADGVKAHSHSASAS
STDLGTKTTSSFDYGTKGTNSTGGHTHSGSGSTSTNGEHSHYIEAWNGTGVGGNKMSSYAISYRAGGSNTNAAGNHSHTF
SFGTSSAGDHSHSVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRLA

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xgf:A 216 216 1.0000 1.0000 1.0000 5.64e-155 2xgf:B, 2xgf:C
2 5ks8:F 482 46 0.0741 0.0332 0.3478 0.066
3 5iv5:O 526 68 0.1065 0.0437 0.3382 0.53 5iv5:P, 5iv5:Q, 5iv5:l, 5iv5:m, 5iv5:n, 5iv5:AI, 5iv5:AJ, 5iv5:BA, 5iv5:DB, 5iv5:DC, 5iv5:DD, 5iv5:FE, 5iv5:FF, 5iv5:FG, 5iv5:HH, 5iv5:HI, 5iv5:HJ, 1ocy:A
4 6b9t:D 453 45 0.0648 0.0309 0.3111 2.0 6b9s:A, 6b9s:D, 6b9s:C, 6b9s:G, 6b9s:E, 6b9t:A, 6b9t:B, 6b9t:C, 6b9t:E, 6b9t:F, 6b9t:G, 6b9t:H
5 2xf3:B 428 38 0.0648 0.0327 0.3684 3.0 2xf3:A, 2xfs:A, 2xfs:B, 2xh9:A, 2xh9:B
6 6aqh:B 490 120 0.1435 0.0633 0.2583 6.0 6aqh:A, 6aqh:C, 6aqh:D
7 4zfq:A 346 146 0.1713 0.1069 0.2534 6.6
8 4v2x:A 534 83 0.1296 0.0524 0.3373 7.5
9 5wol:A 230 85 0.1157 0.1087 0.2941 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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