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BioLiP
>protein
SSVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSVTSWLVGSAIHIRVYASTGTTTTEWCWDGKG
WYKGAYTATN

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f37:A 113 89 0.9556 0.7611 0.9663 9.16e-59 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
2 7e7v:A 271 89 0.9333 0.3100 0.9438 1.70e-53 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
3 7e7v:A 271 86 0.9222 0.3063 0.9651 9.28e-53 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
4 7e7v:A 271 86 0.8889 0.2952 0.9302 8.88e-51 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
5 6zfc:A 87 85 0.7111 0.7356 0.7529 3.42e-43 6zfc:B, 6zfc:C, 6zfc:D, 6zfc:E, 6zfc:F, 3zw0:C, 3zw1:A, 3zw1:B, 3zw2:A, 3zw2:B, 3zw2:C, 3zwe:A, 3zwe:B, 3zwe:C, 3zzv:A, 3zzv:B, 3zzv:C
6 6htn:A 143 79 0.4111 0.2587 0.4684 1.22e-13 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
7 6htn:A 143 78 0.4222 0.2657 0.4872 4.17e-13 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
8 6htn:A 143 29 0.1667 0.1049 0.5172 0.005 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
9 6trv:AAA 294 85 0.4222 0.1293 0.4471 2.77e-09 6trv:BBB
10 6trv:AAA 294 69 0.3444 0.1054 0.4493 8.49e-07 6trv:BBB
11 6trv:AAA 294 83 0.3556 0.1088 0.3855 2.90e-04 6trv:BBB
12 5eo8:A 311 88 0.3556 0.1029 0.3636 9.41e-05 5eo7:A, 5eo7:B, 5eo7:C, 5h47:A, 5h47:B, 5h47:C, 5h47:J, 5h47:D, 5h47:E, 5h47:F, 5h47:G, 5h47:K, 5h47:H, 5h47:I, 5h47:L
13 6z6c:BBB 317 89 0.3556 0.1009 0.3596 1.23e-04 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
14 5mxc:A 313 101 0.4000 0.1150 0.3564 2.27e-04 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
15 5mxc:A 313 100 0.3444 0.0990 0.3100 0.014 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
16 5mxc:A 313 83 0.3111 0.0895 0.3373 0.025 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
17 3o9z:A 310 66 0.2111 0.0613 0.2879 0.40 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
18 7c39:A 346 65 0.2222 0.0578 0.3077 0.47 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
19 7c39:A 346 32 0.1444 0.0376 0.4062 6.0 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
20 5dtb:A 263 39 0.1778 0.0608 0.4103 1.0 5dtb:B, 5ehm:A, 5ehm:B, 5ehs:A, 5ehs:B
21 6er9:A 531 50 0.1556 0.0264 0.2800 4.2 6er9:B, 6era:A, 6era:B, 3gwd:A, 3gwf:A, 4rg3:A, 4rg4:A, 3ucl:A
22 5gxe:A 331 32 0.1333 0.0363 0.3750 5.1 5gxe:B
23 3c9f:B 540 27 0.1222 0.0204 0.4074 7.5 3c9f:A
24 3seq:D 650 33 0.1333 0.0185 0.3636 8.3 3dla:B, 3seq:C, 3sez:D, 3sez:C, 3syt:D, 3szg:B
25 6ofc:B 669 33 0.1333 0.0179 0.3636 8.3 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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