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BioLiP
>protein
SSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKHDLLLYYSLMCFRHQLMLDYLEPKISDLLEKIESSQTDLKG
ILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMHHIVQAIDSYKAHENY
TVRVIQCSFVIGLNYLDMDYPEKAIPHFKNALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKASEYFKEGIRVYQDNGY
EHSNRILDILLMLTKTTFKMRNHSEGISWCAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLNSILNYLELKSMLSDV
EDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQ

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8rsv:B 365 361 1.0000 0.9726 0.9834 0.0 8rst:A, 8rsu:A, 8rsv:A, 8rtc:A, 8rtc:B
2 4i9e:A 383 368 0.4535 0.4204 0.4375 7.86e-99 4i9c:A, 4i9e:B, 3ulq:A
3 4gyo:B 359 358 0.3972 0.3928 0.3939 3.52e-83 4gyo:A
4 6t46:G 365 359 0.2930 0.2849 0.2897 4.49e-44 6t46:A, 6t46:C, 6t46:E
5 8rte:A 350 228 0.1944 0.1971 0.3026 2.36e-20 8rte:B
6 4gpk:J 347 258 0.1493 0.1527 0.2054 7.65e-08 4gpk:A, 4gpk:B, 4gpk:C, 4gpk:D, 4gpk:E, 4gpk:F, 4gpk:G, 4gpk:H, 4gpk:I, 4gpk:K, 4gpk:L
7 8chy:A 272 255 0.1465 0.1912 0.2039 0.028 8bu0:A, 8cig:A, 8ckr:A, 8cqp:C, 8cqq:A
8 8chy:A 272 182 0.1042 0.1360 0.2033 0.038 8bu0:A, 8cig:A, 8ckr:A, 8cqp:C, 8cqq:A
9 7ern:C 284 48 0.0507 0.0634 0.3750 0.44 7erm:A, 7erm:B, 7erm:C, 7erm:D, 7ern:A, 7ern:B, 7ern:D, 7ero:A, 7ero:B, 7ero:C, 7ero:D
10 8ro2:I 753 96 0.0817 0.0385 0.3021 0.52
11 3kd7:A 102 64 0.0592 0.2059 0.3281 1.1 3kd7:B, 3kd7:C, 3kd7:D, 3kd7:E
12 3qo8:A 441 61 0.0592 0.0476 0.3443 1.8 3qo7:A
13 1na0:B 119 108 0.0648 0.1933 0.2130 4.2 1na3:A, 1na3:B
14 8sk0:B 330 48 0.0423 0.0455 0.3125 6.1 8shh:A, 8shh:B, 8sk0:A
15 4lh6:A 322 54 0.0479 0.0528 0.3148 7.6 3ba8:A, 3ba9:A, 3baa:A, 3bab:A, 4eeq:A, 4efb:A, 4efe:A, 8jyd:A, 4lh7:A, 1ta8:A, 1tae:A, 1tae:B, 1tae:C, 1tae:D
16 3l6x:A 434 82 0.0620 0.0507 0.2683 9.5 3l6y:A, 3l6y:C, 3l6y:E
17 6li9:A 623 112 0.0761 0.0433 0.2411 9.7 6li9:C, 6lid:A, 6lid:C, 6yup:A, 6yup:C, 6yuz:A, 6yuz:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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