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BioLiP
>protein
SSRISALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPS
GTANRSMQLTFSGSVPDTLVSSRNSATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATTIKIIAEQ

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4k6b:B 156 153 1.0000 0.9808 1.0000 1.22e-106 4k6b:A, 4k6b:C, 3rwn:A, 3rwn:C, 3rwn:B
2 5t2a:AP 223 39 0.1111 0.0762 0.4359 0.24 8a3w:SF, 8a98:SF, 6az1:F, 8ovj:SF, 8rxh:SF, 8rxx:SF
3 2r0l:A 239 42 0.0784 0.0502 0.2857 1.4 3k2u:A, 2wub:A, 2wub:C, 2wuc:A
4 5kar:A 412 89 0.1634 0.0607 0.2809 3.3 5kas:A
5 7uve:A 229 32 0.0784 0.0524 0.3750 3.7
6 1jnn:H 214 73 0.1438 0.1028 0.3014 6.9
7 6yxy:AE 434 50 0.1111 0.0392 0.3400 7.8 7aih:A, 7am2:A, 7ane:A, 7aoi:AE, 6yxx:AE

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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