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BioLiP
>protein
SSQQVWKLVIITEEILLKKVSKIIKEAGASGYTVLAAAGEGSRNVRSTGEPSVSHAYSNIKFEVLTASRELADQIQDKVV
AKYFDDYSCITYISTVEAL

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ntb:C 104 99 1.0000 0.9519 1.0000 2.86e-68 6mm2:A, 6ntb:A, 6ntb:B
2 6mmo:A 91 99 0.8687 0.9451 0.8687 2.79e-53 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
3 7cyf:D 109 93 0.5556 0.5046 0.5914 4.33e-37 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
4 7r30:B 102 93 0.4747 0.4608 0.5054 3.00e-27 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
5 7o4x:A 103 29 0.1111 0.1068 0.3793 0.41
6 6ow4:F 284 51 0.1616 0.0563 0.3137 0.80 6ow4:A, 6ow4:B, 6ow4:C, 6ow4:D, 6ow4:E, 6ow4:G, 6ow4:H
7 1pto:B 196 27 0.1212 0.0612 0.4444 2.6
8 5xkt:A 199 26 0.0909 0.0452 0.3462 3.6 5xkt:B
9 4wa6:D 415 25 0.1010 0.0241 0.4000 6.1 4w4u:D
10 4fjc:E 434 25 0.1010 0.0230 0.4000 6.1 3m99:A, 3mhh:A
11 7w1y:2 706 42 0.1414 0.0198 0.3333 6.1 7pfo:2, 7plo:2, 8q6o:A, 8q6o:2, 8q6p:2, 7w1y:A, 6xtx:2, 6xty:2
12 3mhs:A 455 25 0.1010 0.0220 0.4000 6.2 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
13 4oh1:A 351 71 0.2020 0.0570 0.2817 6.3
14 8osi:A 400 57 0.1616 0.0400 0.2807 6.6
15 4ggv:A 396 35 0.1414 0.0354 0.4000 7.2
16 8b9d:2 576 42 0.1414 0.0243 0.3333 7.3
17 4eo3:A 321 23 0.0909 0.0280 0.3913 7.7 4eo3:B
18 1z82:A 312 72 0.1717 0.0545 0.2361 8.8 1z82:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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