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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSQQVWKLVIITEEILLKKVSKIIKEAGASGYTVLAAAGEGAYSNIKFEVLTASRELADQIQDKVVAKYFDDYSCITYIS
TVEALRAHKF

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mmo:A 91 91 1.0000 0.9890 0.9890 3.74e-59 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
2 6ntb:C 104 104 1.0000 0.8654 0.8654 2.61e-57 6mm2:A, 6ntb:A, 6ntb:B
3 7r30:B 102 87 0.5333 0.4706 0.5517 3.00e-29 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 103 0.5333 0.4404 0.4660 5.34e-28 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 1z82:A 312 59 0.1778 0.0513 0.2712 0.72 1z82:B
6 7o4x:A 103 25 0.1222 0.1068 0.4400 0.93
7 8k22:A 929 38 0.1444 0.0140 0.3421 2.3 8k21:a, 8k22:a, 8k23:A, 8k23:a, 8k24:a, 8k24:A, 8k25:A, 8k25:a
8 5xkt:A 199 26 0.1000 0.0452 0.3462 2.6 5xkt:B
9 2e87:A 356 63 0.1667 0.0421 0.2381 3.7
10 4wa6:D 415 25 0.1111 0.0241 0.4000 4.9 4w4u:D
11 4fjc:E 434 25 0.1111 0.0230 0.4000 4.9 3m99:A, 3mhh:A
12 3mhs:A 455 25 0.1111 0.0220 0.4000 4.9 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
13 4eo3:A 321 23 0.1000 0.0280 0.3913 6.9 4eo3:B
14 6xov:A 966 64 0.2000 0.0186 0.2812 8.6
15 4rpu:A 988 64 0.2000 0.0182 0.2812 8.6 4l3t:A, 4l3t:B, 4nge:A, 4nge:D, 4rpu:B
16 1hyh:A 297 58 0.1889 0.0572 0.2931 9.6 1hyh:B, 1hyh:C, 1hyh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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