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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQKGKLPSTVVSQLCQPLKTDPRFAGQPSRLY
MSAIHIVDYIYKSWLAIQKRLQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMSLSKTLFDAYQETEDI
KSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRLTEKLISRMPKGRDLTNAKWLETLLTATTTVAEDNAQAKRW
QDILLTRSSSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNRQLHWFQRFLEDQQTKRKSKNQHSSGLFT
LRNGHLVWLEGEGKGEPWNLHHLTLYCCVDNRLWTEEGTEIVRQEKADEITKFITNMKSDTQQALIQRKQSTLTRINNSF
ERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQLLGDNYELLNRQRRQQQYLSHERHKAQKNFSPNQ
FGASELGQHIDRLLAKAIVALARTYKAGSIVLPKLGDMREVVQSEIQAIAEQKFPGYIEGQQKYAKQYRVNVHRWSYGRL
IQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNLRL

The query sequence (length=602) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bd5:A 605 607 0.9934 0.9884 0.9852 0.0 8ea3:O, 8ea4:O, 8rdu:A, 8rkt:A
2 8bd6:A 560 607 0.9186 0.9875 0.9110 0.0
3 8axa:A 465 367 0.5997 0.7763 0.9837 0.0 7n3o:A, 7n3p:A, 7pla:A
4 8axa:A 465 100 0.1645 0.2129 0.9900 1.29e-61 7n3o:A, 7n3p:A, 7pla:A
5 8axb:A 430 355 0.5548 0.7767 0.9408 0.0
6 8axb:A 430 95 0.1578 0.2209 1.0000 1.03e-59
7 3jd5:c 168 61 0.0316 0.1131 0.3115 0.47 6neq:c, 6nf8:c
8 5yna:A 1055 86 0.0415 0.0237 0.2907 1.4 2fgz:A, 2fh6:A, 2fh8:A, 2fhb:A, 2fhc:A, 2fhf:A, 6j33:A, 6j33:B, 6j34:A, 6j35:A, 6j35:B, 6j4h:A, 5yn2:A, 5yn7:A, 5ync:A, 5ynd:A, 5yne:A, 5ynh:A, 2yoc:A, 2yoc:B
9 5exc:E 59 16 0.0166 0.1695 0.6250 2.2 5exc:F, 5exc:G, 5exc:H
10 8gxv:A 353 78 0.0415 0.0708 0.3205 4.2
11 5kpv:33 675 109 0.0482 0.0430 0.2661 4.4 5kps:A, 5kpw:33, 5kpx:33
12 6kf9:C 388 77 0.0415 0.0644 0.3247 8.0 9bct:C, 9bcu:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218