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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSPVWSEPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE
CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINR
EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFC
GLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA
LQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTY
FLQKPVPGFE

The query sequence (length=410) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ft1:B 416 403 0.9610 0.9471 0.9777 0.0 2bed:B, 1d8d:B, 1d8e:B, 3dpy:B, 3e30:B, 3e32:B, 3e33:B, 3e34:B, 3e37:B, 8e9e:B, 3eu5:B, 3euv:B, 2f0y:B, 1fpp:B, 1ft2:B, 4gtm:B, 4gto:B, 4gtp:B, 4gtq:B, 4gtr:B, 2h6f:B, 2h6g:B, 2h6h:B, 2h6i:B, 2iej:B, 1jcq:B, 1jcr:B, 1jcs:B, 3ksl:B, 3ksq:B, 1kzo:B, 1kzp:B, 1ld7:B, 1ld8:B, 1mzc:B, 1n94:B, 1n95:B, 1n9a:B, 1ni1:B, 1nl4:B, 1o1r:B, 1o1s:B, 1o1t:B, 1o5m:B, 3pz4:B, 1qbq:B, 2r2l:B, 7rn5:B, 7rni:B, 1s63:B, 1sa4:B, 1sa5:B, 1tn6:B, 1tn7:B, 1tn8:B, 1x81:B, 2zir:B, 2zis:B
2 4l9p:B 452 326 0.3415 0.3097 0.4294 1.57e-74 4lnb:B, 4lng:B, 4mbg:B
3 4ydo:B 412 379 0.3293 0.3277 0.3562 1.95e-68 4yde:B
4 7t09:B 497 420 0.3659 0.3018 0.3571 4.96e-66 3q73:B, 3q75:B, 3q78:B, 3q79:B, 3q7a:B, 3q7f:B, 3sfx:B, 3sfy:B, 7t08:B, 7t0a:B, 7t0b:B, 7t0c:B, 7t0d:B, 7t0e:B, 8t70:B
5 1dce:B 329 336 0.2415 0.3009 0.2946 2.01e-41 3c72:B, 1dce:D, 3dss:B, 3dst:B, 3dsu:B, 3dsv:B, 3dsw:B, 3dsx:B, 4ehm:B, 4gts:B, 4gtt:B, 4gtv:B, 3hxb:B, 3hxc:B, 3hxd:B, 3hxe:B, 3hxf:B, 6j6x:B, 6j74:B, 6j7f:B, 6j7x:B, 1ltx:B, 6o60:B, 3pz1:B, 3pz2:B, 3pz3:B
6 1n4p:B 346 335 0.2293 0.2717 0.2806 3.37e-29 1n4p:D, 1n4p:F, 1n4p:H, 1n4p:J, 1n4p:L, 1n4q:B, 1n4q:D, 1n4q:F, 1n4q:H, 1n4q:J, 1n4q:L, 1n4r:B, 1n4r:D, 1n4r:F, 1n4r:H, 1n4r:J, 1n4r:L, 1n4s:B, 1n4s:D, 1n4s:F, 1n4s:H, 1n4s:L, 1n4s:J, 8rdx:B, 8rdx:D, 8rdx:F, 8rdx:H, 8rdx:J, 8rdx:L, 1s64:B, 1s64:D, 1s64:F, 1s64:H, 1s64:J, 1s64:L, 1tnb:B, 1tnb:D, 1tnb:F, 1tnb:H, 1tnb:J, 1tnb:L, 1tno:B, 1tno:D, 1tno:F, 1tno:H, 1tno:J, 1tno:L, 1tnu:B, 1tnu:D, 1tnu:F, 1tnu:H, 1tnu:J, 1tnu:L, 1tny:B, 1tny:D, 1tny:F, 1tny:H, 1tny:J, 1tny:L, 1tnz:B, 1tnz:D, 1tnz:F, 1tnz:H, 1tnz:J, 1tnz:L
7 3dra:B 364 347 0.2073 0.2335 0.2450 5.05e-14
8 2sqc:A 623 226 0.1268 0.0835 0.2301 0.024 1gsz:A, 1gsz:B, 1gsz:C, 1h35:A, 1h35:B, 1h35:C, 1h36:A, 1h36:B, 1h36:C, 1h37:A, 1h37:B, 1h37:C, 1h39:A, 1h39:B, 1h39:C, 1h3a:A, 1h3a:B, 1h3a:C, 1h3b:A, 1h3b:B, 1h3b:C, 1h3c:A, 1h3c:B, 1h3c:C, 1o6h:A, 1o6h:B, 1o6h:C, 1o6q:A, 1o6q:B, 1o6q:C, 1o6r:A, 1o6r:B, 1o6r:C, 1o79:A, 1o79:B, 1o79:C, 2sqc:B, 1ump:A, 1ump:B, 1ump:C
9 6e9n:A 409 45 0.0317 0.0318 0.2889 1.6 6e9o:B, 6e9o:A
10 6beh:B 544 81 0.0585 0.0441 0.2963 2.7 6beb:A, 6bec:A, 6bec:B, 6bec:C, 6bed:A, 6bed:C, 6bee:A, 6bee:C, 6bef:A, 6bef:C, 6beh:A, 6beh:C
11 7mfm:G 1483 167 0.0927 0.0256 0.2275 6.9 7mfm:H, 7mft:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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