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BioLiP
>protein
SSLSKEAELVHQALLARGLETPLRKPELDAETRKTRIQAHMTEVMHLLNLDLTDDSLADTPRRIAKMYVDEIFSGLDYEN
FPKITLIQNKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILLAL
QTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVR

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4du6:A 219 216 1.0000 0.9863 1.0000 3.12e-161 4du6:B, 4du6:C, 4du6:D, 4du6:E
2 1a8r:A 221 217 0.8981 0.8778 0.8940 2.10e-135 1a8r:B, 1a8r:C, 1a8r:D, 1a8r:E, 1a8r:F, 1a8r:G, 1a8r:H, 1a8r:I, 1a8r:J, 1a8r:K, 1a8r:L, 1a8r:M, 1a8r:N, 1a8r:O, 1a9c:A, 1a9c:B, 1a9c:C, 1a9c:D, 1a9c:E, 1a9c:F, 1a9c:G, 1a9c:H, 1a9c:I, 1a9c:J, 1a9c:K, 1a9c:L, 1a9c:M, 1a9c:N, 1a9c:O, 1fbx:A, 1fbx:B, 1fbx:C, 1fbx:D, 1fbx:E, 1fbx:F, 1fbx:G, 1fbx:H, 1fbx:I, 1fbx:J, 1fbx:K, 1fbx:L, 1fbx:M, 1fbx:N, 1fbx:O, 1n3r:A, 1n3r:E, 1n3r:B, 1n3r:C, 1n3r:D, 1n3r:F, 1n3r:J, 1n3r:G, 1n3r:H, 1n3r:I, 1n3r:K, 1n3r:O, 1n3r:L, 1n3r:M, 1n3r:N, 1n3s:A, 1n3s:E, 1n3s:B, 1n3s:C, 1n3s:D, 1n3s:F, 1n3s:J, 1n3s:G, 1n3s:H, 1n3s:I, 1n3t:F, 1n3t:J, 1n3t:G, 1n3t:H, 1n3t:I, 1n3t:K, 1n3t:O, 1n3t:L, 1n3t:M, 1n3t:N, 1n3t:A, 1n3t:E, 1n3t:B, 1n3t:C, 1n3t:D
3 1fb1:A 196 123 0.2546 0.2806 0.4472 5.16e-34 7ala:A, 7ala:E, 7ala:B, 7ala:C, 7ala:D, 7alb:A, 7alb:E, 7alb:B, 7alb:C, 7alb:D, 7alb:F, 7alb:J, 7alb:G, 7alb:H, 7alb:I, 7alb:K, 7alb:O, 7alb:L, 7alb:M, 7alb:N, 7alb:P, 7alb:T, 7alb:Q, 7alb:R, 7alb:S, 7alc:A, 7alc:D, 7alq:A, 7alq:E, 7alq:B, 7alq:C, 7alq:D, 7alq:F, 7alq:J, 7alq:G, 7alq:H, 7alq:I, 7alq:K, 7alq:O, 7alq:L, 7alq:M, 7alq:N, 7alq:P, 7alq:T, 7alq:Q, 7alq:R, 7alq:S, 1fb1:B, 1fb1:C, 1fb1:D, 1fb1:E, 1is8:A, 1is8:B, 1is8:C, 1is8:D, 1is8:E, 1is8:F, 1is8:G, 1is8:H, 1is8:I, 1is8:J, 1wpl:A, 1wpl:E, 1wpl:B, 1wpl:C, 1wpl:D, 1wpl:F, 1wpl:J, 1wpl:G, 1wpl:H, 1wpl:I, 6z80:A, 6z80:B, 6z80:C, 6z80:E, 6z80:G, 6z80:H, 6z80:I, 6z80:J, 6z80:F, 6z80:D, 6z86:A, 6z86:Q, 6z86:B, 6z86:D, 6z86:C, 6z86:T, 6z86:E, 6z86:J, 6z86:F, 6z86:M, 6z86:G, 6z86:K, 6z86:N, 6z86:H, 6z86:I, 6z86:L, 6z86:O, 6z86:P, 6z86:S, 6z86:R, 6z87:A, 6z87:B, 6z87:C, 6z87:D, 6z87:E, 6z88:A, 6z88:E, 6z88:B, 6z89:A, 6z89:B, 6z89:C, 6z89:D
4 1wm9:A 185 191 0.3194 0.3730 0.3613 1.94e-33 1wm9:B, 1wm9:C, 1wm9:D, 1wm9:E, 1wuq:A, 1wuq:B, 1wuq:E, 1wuq:C, 1wuq:D, 1wur:A, 1wur:B, 1wur:E, 1wur:C, 1wur:D
5 7alc:E 171 123 0.2454 0.3099 0.4309 4.89e-30 7alc:B, 7alc:C, 6z85:A, 6z85:E, 6z85:C, 6z85:B, 6z85:D, 6z85:G, 6z85:F, 6z85:H, 6z85:I, 6z85:J, 6z88:C, 6z88:F, 6z88:I, 6z88:D, 6z88:H, 6z88:J, 6z88:G, 6z89:E
6 5d8h:C 158 108 0.1435 0.1962 0.2870 0.094 5dar:C, 5dar:F
7 4v58:G 2060 53 0.0833 0.0087 0.3396 0.50 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
8 4x04:A 301 101 0.1296 0.0930 0.2772 1.4 4x04:B, 4x04:C, 4x04:D
9 4odt:H 226 57 0.0880 0.0841 0.3333 2.1 1cbv:H, 2hkf:H, 4z8f:H
10 3gg7:A 243 39 0.0787 0.0700 0.4359 2.9
11 6jtc:A 699 105 0.1157 0.0358 0.2381 4.0 6jtc:B, 7r51:A, 7r51:B, 5sdc:A, 5sdc:B, 5sdd:A, 5sdd:B, 5sde:A, 5sde:B, 5sdf:A, 5sdf:B, 5sdg:A, 5sdg:B, 5sdh:A, 5sdh:B, 5sdi:A, 5sdi:B, 5sdj:A, 5sdk:A, 5sdl:A, 5sdl:B, 5sdm:A, 5sdm:B, 5sdn:A, 5sdn:B, 5sdo:A, 5sdo:B, 5sdp:A, 5sdp:B, 5sdq:A, 5sdq:B, 5sdr:A, 5sdr:B
12 8zc9:B 971 60 0.0694 0.0154 0.2500 4.5 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
13 7bkb:D 549 124 0.1204 0.0474 0.2097 4.8 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
14 1jlk:A 141 46 0.0694 0.1064 0.3261 5.8
15 7yp9:C 1230 62 0.0833 0.0146 0.2903 6.3
16 8zc9:A 1000 56 0.0648 0.0140 0.2500 6.5 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D
17 8apq:A 406 87 0.1065 0.0567 0.2644 9.9 8apq:B, 8apq:C, 8apq:D, 8apq:E, 8apq:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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