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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLI
TKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2l8r:A 150 150 1.0000 1.0000 1.0000 4.80e-112 4j5r:A, 4j5r:B, 4j5s:A, 4j5s:B, 4j5s:C, 4j5s:D
2 5m3e:A 152 150 0.2667 0.2632 0.2667 4.43e-11
3 7omu:AAA 376 154 0.2267 0.0904 0.2208 3.75e-06 7omu:BBB
4 6lfr:A 166 42 0.0933 0.0843 0.3333 1.6 6lfs:A, 6lft:A, 6lfu:A, 6lfu:B
5 5kkb:A 469 60 0.1133 0.0362 0.2833 2.9 5kkb:B, 1nxc:A
6 3q3h:B 595 31 0.0733 0.0185 0.3548 3.0
7 3q3h:A 620 31 0.0733 0.0177 0.3548 3.2 8j30:A, 8j30:B
8 6m64:A 203 76 0.1400 0.1034 0.2763 3.3 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A
9 7vh6:A 768 37 0.1000 0.0195 0.4054 3.5 7vh6:B, 7vh6:C, 7vh6:D, 7vh6:E, 7vh6:F
10 4v61:BQ 122 34 0.0867 0.1066 0.3824 5.1
11 3dlp:X 504 43 0.1067 0.0317 0.3721 5.4 3cw8:X, 3cw9:A, 3cw9:B, 2qvx:X, 2qvy:X, 2qvz:X, 2qw0:X, 1t5d:X, 1t5h:X
12 7wzm:A 458 99 0.1467 0.0480 0.2222 5.5 7wzl:A
13 5fl7:H 113 46 0.1000 0.1327 0.3261 6.5
14 4gc1:A 275 58 0.1133 0.0618 0.2931 6.5 4gc1:B, 4gc2:B, 3m7j:A, 3m7j:B
15 7c3k:B 389 48 0.1133 0.0437 0.3542 7.2 7c3k:A, 8jqz:A, 8jqz:B
16 3v2b:A 176 35 0.0667 0.0568 0.2857 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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