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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSLLDIIYQLRQVPRWDGSFQFEKEDVSQHSFSVIAISHILCELKETLEGKKINKEKLLLYALYHDVTEVVSTHIISPVK
KNSILKDPFNAFREQIKNSLFDNLPITLSDTLSTILNNNDLEIQEIVEHADHVDAYCKSCIEVHRGNKDFISIQRSLGDK
LDNLTKEYPYLKEFQNLFLKDFPLENKNYRY

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5tk6:A 191 191 1.0000 1.0000 1.0000 2.49e-140 5tk7:A, 5tk8:A, 5tk9:A
2 5tka:A 167 189 0.8743 1.0000 0.8836 1.59e-116
3 2par:B 178 177 0.2408 0.2584 0.2599 3.30e-15 2par:A, 2pau:A, 2pau:B
4 3mzo:B 211 149 0.2042 0.1848 0.2617 2.30e-07 3mzo:A, 3mzo:C
5 4dmb:B 190 74 0.0995 0.1000 0.2568 0.30 4dmb:A, 4l7w:A
6 5zbs:C 323 112 0.1414 0.0836 0.2411 0.55 3gbj:A, 3gbj:C
7 6rqh:R 330 34 0.0576 0.0333 0.3235 0.60 6rql:R, 6rrd:R, 6rui:R, 6ruo:R, 6rwe:R, 6tps:R
8 6mve:A 680 79 0.1361 0.0382 0.3291 1.6 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
9 7xs4:A 329 42 0.0681 0.0395 0.3095 2.1 6l8k:A
10 4kc8:A 449 101 0.1309 0.0557 0.2475 2.7
11 4gme:A 403 153 0.1623 0.0769 0.2026 3.4 4gme:C, 3vcn:A, 3vcn:C
12 4zxh:A 1314 63 0.0785 0.0114 0.2381 4.7 4zxi:A
13 6yyi:B 502 22 0.0576 0.0219 0.5000 5.6
14 7yul:A 92 20 0.0576 0.1196 0.5500 6.4 7yun:A, 7yun:B
15 6x6x:A 417 60 0.0995 0.0456 0.3167 8.2 2wn6:A, 2wn7:A, 6x6r:A, 6x6r:B, 6x6v:A, 6x6v:B, 6x6v:C, 6x6v:D, 6x6x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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