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BioLiP
>protein
SSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKT

The query sequence (length=48) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3wuv:Q 62 48 1.0000 0.7742 1.0000 1.02e-29 3e1r:A, 3e1r:B, 3wut:A, 3wut:B, 3wut:D, 3wut:E, 3wut:G, 3wut:H, 3wut:J, 3wut:K, 3wuu:A, 3wuu:B, 3wuu:D, 3wuu:E, 3wuu:J, 3wuu:K, 3wuu:G, 3wuu:H, 3wuv:A, 3wuv:B, 3wuv:D, 3wuv:E, 3wuv:G, 3wuv:H, 3wuv:J, 3wuv:K, 3wuv:M, 3wuv:N, 3wuv:P
2 2wys:B 516 32 0.2500 0.0233 0.3750 0.85 2w5f:A, 2w5f:B, 2wys:A, 2wze:A, 2wze:B
3 8pv6:CR 516 12 0.1458 0.0136 0.5833 2.6 8pv8:CR
4 6vlz:Q 240 33 0.2708 0.0542 0.3939 3.0 7a5f:Q3, 7a5g:Q3, 7a5h:Q, 7a5i:Q3, 7a5j:Q, 7a5k:Q3, 8any:Q, 6i9r:Q, 3j7y:Q, 3j9m:Q, 8k2a:LS, 8k2b:LS, 7l08:Q, 7l20:Q, 6nu2:Q, 6nu3:Q, 7o9k:Q, 7o9m:Q, 7odr:Q, 7ods:Q, 7odt:Q, 7of0:Q, 7of2:Q, 7of3:Q, 7of4:Q, 7of5:Q, 7of6:Q, 7of7:Q, 7og4:XQ, 7oi7:Q, 7oi8:Q, 7oi9:Q, 7oia:Q, 7oib:Q, 7oic:Q, 7oid:Q, 7oie:Q, 8oir:BX, 8oit:BX, 5ool:Q, 5oom:Q, 7pd3:Q, 8pk0:Q, 7po4:Q, 7qh6:Q, 7qh7:Q, 7qi4:Q, 7qi5:Q, 7qi6:Q, 8qsj:Q, 8qu1:Q, 8qu5:Q, 6vmi:Q, 8xt0:LS, 8xt1:LS, 8xt2:LS, 8xt3:LS, 6zm5:Q, 6zm6:Q, 6zs9:XQ, 6zsa:XQ, 6zsb:XQ, 6zsc:XQ, 6zsd:XQ, 6zse:XQ, 6zsg:XQ
5 8pv4:CR 390 18 0.1875 0.0231 0.5000 3.4
6 8wgh:H 90 33 0.2292 0.1222 0.3333 5.9
7 4qhz:C 240 23 0.1875 0.0375 0.3913 6.5 4qhz:A, 4qhz:B, 4qhz:D
8 6jon:A 280 26 0.1667 0.0286 0.3077 7.0 6jop:A, 6joq:A, 6k9a:A, 7rr3:A, 7rr4:A
9 6l2c:A 402 38 0.2500 0.0299 0.3158 7.4 6l2c:B, 6l2c:C, 6l2c:D
10 2x5d:D 380 27 0.2708 0.0342 0.4815 7.8 2x5d:A
11 7pub:Cr 267 25 0.1875 0.0337 0.3600 8.0 6hiv:Cr, 6hiw:Cr, 6hiy:Cr
12 4d1q:H 509 23 0.2083 0.0196 0.4348 8.0 4d1q:A, 4d1q:B, 4d1q:G
13 7ea4:A 762 32 0.2083 0.0131 0.3125 8.3 7ea4:B, 7eby:A, 7eby:B, 7eby:C, 7eby:D, 7eby:E, 7eby:F
14 8edg:A 550 23 0.2083 0.0182 0.4348 9.3 6dww:A, 6dwy:A, 6dwz:A, 6dwz:E, 6dx0:A, 8eb5:A, 8edg:C, 8edg:I, 8edg:E, 8edg:G, 8edg:K, 8sjd:C, 8sjd:D, 8sjd:B, 8sjd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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