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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL
LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY
WGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK
ESLKE

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1iru:G 245 245 1.0000 1.0000 1.0000 0.0 1iru:U
2 3sdi:F 242 242 0.5020 0.5083 0.5083 3.20e-81 3mg6:F, 3mg7:F, 3mg8:F, 3oeu:F, 3oev:F, 3sdi:T, 3sdk:F
3 8g6e:C 242 229 0.3265 0.3306 0.3493 1.76e-43 8g6e:Q
4 6he5:D 242 173 0.3102 0.3140 0.4393 7.69e-43 6he5:E, 6he5:A, 6he5:B, 6he5:G, 6he5:F, 6he5:C
5 5nif:S 236 200 0.3061 0.3178 0.3750 7.77e-39 5nif:E
6 8yvp:M 231 214 0.3061 0.3247 0.3505 4.02e-36 8bzl:D, 8bzl:R
7 1iru:D 243 197 0.2694 0.2716 0.3350 7.06e-35 8bzl:Q, 8bzl:C, 1iru:R
8 8f7k:A 230 172 0.2653 0.2826 0.3779 3.75e-34 8f7k:G, 8f7k:B, 8f7k:C, 8f7k:D, 8f7k:E, 8f7k:F, 8f7k:O, 8f7k:U, 8f7k:P, 8f7k:Q, 8f7k:R, 8f7k:S, 8f7k:T
9 1iru:A 244 174 0.2490 0.2500 0.3506 1.50e-33 1iru:O
10 1iru:B 233 186 0.2612 0.2747 0.3441 3.33e-31 8bzl:O, 8bzl:A, 1iru:P
11 4y81:C 240 175 0.2490 0.2542 0.3486 1.69e-29
12 9ft0:G 243 173 0.2571 0.2593 0.3642 1.84e-28 5ahj:G, 5bou:G, 8bw1:G, 5bxl:G, 5bxn:G, 5cgf:G, 5cgg:G, 5cgh:G, 5cgi:G, 5cz4:G, 5cz5:G, 5cz6:G, 5cz7:G, 5cz8:G, 5cz9:G, 5cza:G, 5d0s:G, 5d0t:G, 5d0v:G, 5d0w:G, 5d0x:G, 5d0z:G, 5dki:G, 5dkj:G, 5fg7:G, 5fg9:G, 5fga:G, 5fgd:G, 5fge:G, 5fgf:G, 5fgg:G, 5fgh:G, 5fgi:G, 5fhs:G, 9fst:G, 9fsv:G, 9ft1:G, 1g0u:G, 1g0u:U, 4g4s:A, 1g65:G, 6g7f:G, 6g8m:G, 6g8n:G, 6gop:G, 6h39:G, 6htb:G, 6htc:G, 6htd:G, 6htp:G, 6htr:G, 6hub:G, 6huc:G, 6huq:G, 6huu:G, 6huv:G, 6hv3:G, 6hv4:G, 6hv5:G, 6hv7:G, 6hva:G, 6hvr:G, 6hvs:G, 6hvt:G, 6hvu:G, 6hvv:G, 6hvw:G, 6hvx:G, 6hvy:G, 6hw0:G, 6hw3:G, 6hw4:G, 6hw5:G, 6hw6:G, 6hw7:G, 6hw8:G, 6hw9:G, 6hwa:G, 6hwb:G, 6hwc:G, 6hwd:G, 6hwe:G, 6hwf:G, 1jd2:G, 5jhr:G, 5jhs:G, 5l52:G, 5l54:G, 5l55:G, 5l5a:G, 5l5b:G, 5l5d:G, 5l5e:G, 5l5f:G, 5l5h:G, 5l5i:G, 5l5j:G, 5l5o:G, 5l5p:G, 5l5q:G, 5l5r:G, 5l5s:G, 5l5t:G, 5l5u:G, 5l5v:G, 5l5w:G, 5l5x:G, 5l5y:G, 5l5z:G, 5l60:G, 5l61:G, 5l62:G, 5l63:G, 5l64:G, 5l65:G, 5l66:G, 5l67:G, 5l68:G, 5l69:G, 5l6a:G, 5l6b:G, 5l6c:G, 5lai:G, 5laj:G, 5ltt:G, 5m2b:G, 3mg4:G, 3mg6:G, 3mg7:G, 3mg8:G, 4nnn:G, 4nnw:G, 4no1:G, 4no6:G, 4no8:G, 4no9:G, 7o2l:G, 3oeu:G, 3oev:G, 8ohz:G, 8oi1:G, 8olr:G, 4qby:G, 4qlq:G, 4qls:G, 4qlt:G, 4qlu:G, 4qlv:G, 4qux:G, 4quy:G, 4qv0:G, 4qv1:G, 4qv3:G, 4qv4:G, 4qv5:G, 4qv6:G, 4qv7:G, 4qv8:G, 4qv9:G, 4qvl:G, 4qvm:G, 4qvn:G, 4qvp:G, 4qvq:G, 4qvv:G, 4qvw:G, 4qvy:G, 4qw0:G, 4qw1:G, 4qw3:G, 4qw4:G, 4qw5:G, 4qw6:G, 4qw7:G, 4qwf:G, 4qwg:G, 4qwi:G, 4qwj:G, 4qwk:G, 4qwl:G, 4qwr:G, 4qwu:G, 4qwx:G, 4qxj:G, 4qz0:G, 4qz2:G, 4qz3:G, 4qz4:G, 4qz5:G, 4qz6:G, 4qz7:G, 4qzw:G, 4qzx:G, 4qzz:G, 4r00:G, 4r02:G, 4r17:G, 4r18:G, 8rhj:G, 8rhk:G, 8rhl:G, 4rur:G, 1ryp:A, 1ryp:O, 3sdi:G, 3sdi:U, 3sdk:G, 4y69:G, 4y6a:G, 4y6v:G, 4y6z:G, 4y70:G, 4y74:G, 4y75:G, 4y77:G, 4y78:G, 4y7w:G, 4y7x:G, 4y7y:G, 4y80:G, 4y81:G, 4y82:G, 4y84:G, 4y8g:G, 4y8h:G, 4y8i:G, 4y8j:G, 4y8k:G, 4y8l:G, 4y8m:G, 4y8n:G, 4y8o:G, 4y8p:G, 4y8q:G, 4y8r:G, 4y8s:G, 4y8t:G, 4y8u:G, 4y9y:G, 4y9z:G, 4ya0:G, 4ya1:G, 4ya2:G, 4ya3:G, 4ya4:G, 4ya5:G, 4ya7:G, 4ya9:G, 4z1l:G, 6zou:G, 6zp6:G, 6zp8:G
13 5l5u:A 250 185 0.2531 0.2480 0.3351 1.97e-28 5l5x:A, 5l60:A, 5l61:A, 5l62:A, 5l63:A, 5l64:A
14 1iru:C 250 211 0.2694 0.2640 0.3128 4.58e-27 8bzl:P, 8bzl:B, 1iru:Q
15 8bzl:S 237 180 0.2245 0.2321 0.3056 2.49e-25 8bzl:E
16 5nif:T 232 178 0.2327 0.2457 0.3202 3.03e-21 5nif:F, 4x6z:T, 4x6z:F
17 1j2q:H 202 123 0.1265 0.1535 0.2520 1.01e-07 1j2q:I, 1j2q:J, 1j2q:K, 1j2q:L, 1j2q:M, 1j2q:N
18 8g6e:I 221 153 0.1388 0.1538 0.2222 0.019 5fmg:I, 5fmg:W, 8g6e:W, 8g6f:I, 8g6f:W, 7lxt:I, 7lxt:W
19 8g6e:K 195 128 0.0939 0.1179 0.1797 0.55 8g6e:Y
20 7tcq:H 216 102 0.0898 0.1019 0.2157 5.8 7tcq:A
21 6v2t:B 251 52 0.0531 0.0518 0.2500 6.6 6v2t:A
22 6pxk:K 429 51 0.0776 0.0443 0.3725 7.0 6pxk:I, 6pxk:A, 6pxk:C, 6pxk:E, 6pxl:B, 6pxl:F, 6pxl:G, 6pxl:K
23 1e94:E 408 51 0.0776 0.0466 0.3725 7.0 1do0:A, 1do0:B, 1do0:D, 1do0:E, 1do2:A, 1do2:C, 1e94:F, 1hqy:E, 1hqy:F, 1ht1:E, 1ht1:F, 1ht1:G, 1ht1:I, 1ht2:E, 1ht2:F, 1ht2:G, 1ht2:H, 6pxk:H, 6pxk:L, 6pxk:B, 6pxl:C, 6pxl:D, 6pxl:H, 6pxl:L, 1yyf:A, 1yyf:B
24 5txv:T 318 51 0.0776 0.0597 0.3725 7.5 5txv:P
25 5txv:X 360 51 0.0776 0.0528 0.3725 8.8 1g4a:E, 1g4a:F, 5ji2:F, 5ji3:F, 5txv:F, 5txv:I, 5txv:M, 5txv:O, 5txv:R, 5txv:V, 5txv:W
26 6pxk:F 388 51 0.0776 0.0490 0.3725 9.1 5ji2:E, 5ji3:E, 6pxi:E, 6pxi:F, 6pxk:G, 6pxl:A, 6pxl:I, 5txv:C, 5txv:E, 5txv:H, 5txv:L, 5txv:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218