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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSGSANFAGVEYPLLPLDQHTPLLFQWFERNPSRFGENQIPIINTQQNPYLNNIINAAIIEKERTIGVLVDGNFSAGQKK
ALAKLEKQYENIKVIYNSDLDYSMYDKKLSDIYLENIAKIEAQPANVRDEYLLGEIKKSLNEVLKNNPEESLVSSHDKRL
GHVRFDFYRNLFLLKGSNAFLEAGKHGCHHLQPGGGCIYLDADMLLTGKLGTLYLPDGIAVHVSRKGNSMSLENGIIAVN
RSEHPALKKGLEIMHSKPYGDPYIDGVCGGLRHYFNCSIRHNYEEFCNFIEFKHEHIFMDTSSL

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6dus:A 310 304 0.9967 0.9774 0.9967 0.0 6cgi:A, 6cgi:B, 6cgi:C, 6cgi:D, 6dus:B, 6eyt:A, 6eyt:B
2 5h63:A 309 303 0.7697 0.7573 0.7723 4.44e-176 5h62:A, 5h62:B, 5h63:D, 5h63:B, 5h63:C, 5xhp:F, 5xhp:E, 5xyk:E
3 5h60:A 304 299 0.5921 0.5921 0.6020 9.45e-130 7ym5:A
4 6aci:A 304 299 0.5691 0.5691 0.5786 1.01e-119
5 8ovs:AAA 276 61 0.0691 0.0761 0.3443 0.14 8ovs:BBB
6 5gvv:A 392 146 0.0987 0.0765 0.2055 0.51 5gvv:F, 5gvw:C, 5gvw:A, 5gvw:B, 5gvw:D
7 3vnq:A 497 86 0.0691 0.0423 0.2442 1.5 3vnr:A, 3vns:A
8 8st8:A 195 53 0.0592 0.0923 0.3396 3.5
9 6rxu:UT 2033 51 0.0559 0.0084 0.3333 7.5 6rxv:UT, 6rxx:UT, 6rxz:UT
10 1iwa:A 473 87 0.0888 0.0571 0.3103 7.8 1bwv:A, 1bwv:C, 1bwv:E, 1bwv:G, 4f0h:A, 1iwa:C, 1iwa:E, 1iwa:I, 1iwa:K, 1iwa:M, 1iwa:O
11 5l3w:A 297 59 0.0559 0.0572 0.2881 8.0 5l3s:B, 5l3s:D, 5l3s:F, 5l3s:H
12 9em9:A 512 47 0.0559 0.0332 0.3617 9.2 9em9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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