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BioLiP
>protein
SSGKKPVKVKTPAGKEAELVPEKVWAMAPKGRKGVKIGLFKDPETGKYFRHKLPDDYPI

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5k17:A 59 59 0.9831 0.9831 0.9831 9.59e-37 6a2h:A, 6a2i:A, 6a2i:B, 5k07:A, 5k17:B, 3kxt:A, 3lwh:A, 3lwi:A, 3lwi:B, 4r55:A, 4r56:A, 4r56:B, 5wvw:A, 5wvw:B, 5wvy:A, 5wvy:B, 5wvz:A, 5wvz:B, 5wwc:A, 5wwc:B
2 2b1q:A 244 67 0.3220 0.0779 0.2836 0.92 2b1r:A, 2d2v:A, 1s2o:A, 1tj3:A, 1tj4:A, 1tj5:A, 1u2s:A, 1u2t:A
3 7lqy:A 659 26 0.2034 0.0182 0.4615 2.4 8gf8:A, 8gf8:B, 8gf8:C, 8gf8:D, 8gf9:A, 8gf9:B, 8gf9:C, 8gf9:D, 8gfa:A, 8gfa:B, 8gfa:C, 8gfa:D, 8jqr:A, 8jqr:B, 8jqr:C, 8jqr:D, 7l2h:A, 7l2h:D, 7l2h:B, 7l2h:C, 7l2i:A, 7l2i:C, 7l2i:D, 7l2i:B, 7l2j:A, 7l2j:B, 7l2j:C, 7l2j:D, 7l2p:A, 7l2p:B, 7l2p:D, 7l2p:C, 7l2r:A, 7l2r:B, 7l2r:C, 7l2r:D, 7l2s:D, 7l2s:A, 7l2s:B, 7l2s:C, 7l2t:A, 7l2t:D, 7l2t:B, 7l2t:C, 7l2u:A, 7l2u:B, 7l2u:D, 7l2u:C, 7l2v:A, 7l2v:D, 7l2v:B, 7l2v:C, 7l2w:A, 7l2w:D, 7l2w:B, 7l2w:C, 7l2x:A, 7l2x:D, 7l2x:B, 7l2x:C, 7lp9:A, 7lp9:B, 7lp9:C, 7lp9:D, 7lqy:B, 7lqy:C, 7lqy:D, 7lqz:A, 7lqz:B, 7lqz:C, 7lqz:D, 7lr0:A, 7lr0:B, 7lr0:C, 7lr0:D, 7mz6:A, 7mz6:B, 7mz6:D, 7mz6:C, 7mz7:A, 7mz7:D, 7mz7:B, 7mz7:C, 7mz9:A, 7mz9:D, 7mz9:C, 7mz9:B, 7mza:A, 7mza:D, 7mza:B, 7mza:C, 7mzb:A, 7mzb:D, 7mzb:B, 7mzb:C, 7mzc:A, 7mzc:D, 7mzc:C, 7mzc:B, 7mzd:A, 7mzd:D, 7mzd:B, 7mzd:C, 7mze:A, 7mze:D, 7mze:B, 7mze:C, 2nyj:A, 2pnn:A, 7rqw:A, 7rqw:C, 7rqw:D, 7rqw:B, 7rqy:A, 7rqy:C, 7rqy:B, 7rqy:D, 7rqz:A, 7rqz:C, 7rqz:B, 7rqz:D, 8t0c:A, 8t0c:D, 8t0c:B, 8t0c:C, 8t0e:A, 8t0e:D, 8t0e:B, 8t0e:C, 8u30:A, 8u30:D, 8u30:B, 8u30:C, 8u3a:D, 8u3c:D, 8u43:A, 8u43:B, 8u43:C, 8u43:D, 8u4d:A, 8u4d:D, 8u4d:C, 8u4d:B, 8x94:A, 8x94:B, 8x94:C, 8x94:D
4 3a4z:A 402 17 0.1525 0.0224 0.5294 3.4 3a4g:A, 3a4h:A, 3a4z:B, 3a4z:C, 3a4z:D, 3a4z:E, 3a50:A, 3a50:B, 3a50:C, 3a50:D, 3a50:E, 3a51:A, 3a51:B, 3a51:C, 3a51:D, 3a51:E, 5gnl:A, 5gnm:A, 5gnm:B, 5gnm:C, 5gnm:D, 3vrm:A
5 6s6y:D 308 34 0.2373 0.0455 0.4118 3.4 6s6y:L, 6s6y:P
6 6oq5:A 2346 23 0.1864 0.0047 0.4783 3.6 6oq7:A, 7s0z:B, 7s0z:A
7 8qen:A 2363 23 0.1864 0.0047 0.4783 3.6 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
8 8p5d:LH0 183 24 0.1864 0.0601 0.4583 4.0 8p60:LH0, 8p60:KH0, 7qca:LH0
9 1ja9:A 259 35 0.2203 0.0502 0.3714 4.1
10 8x2i:A 2303 33 0.1695 0.0043 0.3030 4.8
11 8x2h:A 2363 33 0.1695 0.0042 0.3030 4.8 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
12 2i1o:A 389 34 0.1695 0.0257 0.2941 4.9 1yte:A, 1ytk:A
13 1w3h:A 348 38 0.1864 0.0316 0.2895 6.4 1clx:A, 1clx:B, 1clx:C, 1clx:D, 1e5n:A, 1e5n:B, 1w2p:A, 1w2p:B, 1w2v:A, 1w2v:B, 1w32:A, 1w32:B, 1w3h:B
14 5uu1:A 315 37 0.2034 0.0381 0.3243 6.8 9fet:A, 6ncg:A, 8q1z:A
15 8fgw:B 1152 42 0.2542 0.0130 0.3571 7.3 8fh3:B
16 1zrh:A 263 23 0.1864 0.0418 0.4783 8.3 3uan:A, 3uan:B, 1vkj:A, 1vkj:B, 1vkj:C
17 1fay:A 236 22 0.1525 0.0381 0.4091 9.9 1f9k:A, 1f9k:B, 1fay:B, 1fay:C, 1fay:D, 1fay:E, 1fay:F, 1fay:G, 1fay:H
18 6nb3:A 1169 25 0.1695 0.0086 0.4000 9.9 5gmq:A, 6j11:A, 6j11:B, 6j11:C, 7m5e:C, 7m5e:E, 7m5e:A, 6nb4:A, 6pxh:A, 6pxh:B, 6q04:C, 6q04:A, 6q04:B, 6q05:C, 6q05:A, 6q05:B, 6q06:C, 6q06:A, 6q06:B, 6q07:C, 6q07:A, 6q07:B, 7ymt:B, 7ymt:C, 7ymv:A, 7ymv:B, 7ymy:B, 7ymz:B, 7yn0:A, 7yn0:B, 7yn0:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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