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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSFSFGGFTFKRTSGSSIKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGKDEQSIAEAIIV
AMVFSQEDCMIKAVRGDLNFVNLNPMHQLLRHFQKDAKVLFQNWGIEHIDNVMGMVGVLPDMTPSTEMSMRGIRVSKM

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bek:C 737 163 0.9494 0.2035 0.9202 3.11e-104 7as0:A, 7as1:A, 7as2:A, 7as3:A, 5buh:A, 4cb4:A, 4cb5:A, 4cb6:A, 4cb6:B, 4cb7:B, 5eg7:A, 4eqk:A, 4es5:A, 4es5:B, 4es5:C, 4es5:D, 6euv:A, 6euv:I, 6euv:C, 6euv:F, 6euw:A, 6euy:A, 6euy:B, 6euy:C, 5f79:A, 5fmm:A, 5fmq:A, 8h69:C, 5jun:A, 5jur:A, 4nce:A, 4ncm:A, 7nha:C, 7nhc:C, 7nhx:C, 7ni0:C, 7nik:C, 7nil:C, 7nir:C, 7nis:C, 7nj3:C, 7nj4:C, 7nj5:C, 7nj7:C, 7nk1:C, 7nk2:C, 7nk4:C, 7nk6:C, 7nk8:C, 7nka:C, 7nkc:C, 7nki:C, 7nkr:C, 4p1u:A, 8pm0:C, 8pnp:C, 8pnq:C, 7qtl:C, 7r0e:C, 8r3k:C, 8r3l:C, 8r60:C, 8r65:C, 6rr7:C, 6s5v:AAAA, 6s5v:ABAA, 2vqz:A, 2vqz:B, 2vqz:D, 2vqz:E, 2vqz:F, 3wi1:A, 5wl0:A, 7xme:A, 7xme:B, 7xme:C, 7xme:D, 4yd0:A
2 6evj:C 748 162 0.5633 0.1190 0.5494 8.01e-58 6evj:F, 6evk:C, 9f2r:C, 9f37:C, 6fhh:C, 6fhi:C, 5m3h:C, 6szu:C, 6szv:C, 6t0n:C, 6t0r:C, 6t0s:C, 6t0u:C, 6t0v:C, 6tw1:C, 4wsb:C
3 6eux:A 225 158 0.3418 0.2400 0.3418 6.13e-26
4 6qcs:C 742 158 0.3418 0.0728 0.3418 2.16e-24 8bdr:C, 8be0:C, 8bf5:C, 5efa:A, 5efc:A, 6f5o:C, 5m3j:C, 5msg:C, 4or4:A, 4or4:B, 4or6:A, 4or6:B, 4oro:A, 4oro:B, 4oro:C, 4oro:D, 4q46:A, 4q46:B, 6qct:C, 6qcv:C, 6qcw:C, 6qcx:C, 7r1f:C, 6t0w:C, 4wrt:C, 4wsa:C, 7z42:F, 7z43:CCC
5 7z42:C 718 153 0.3165 0.0696 0.3268 6.81e-21
6 6xzd:CP1 772 135 0.1835 0.0376 0.2148 0.002
7 5eix:J 679 51 0.1456 0.0339 0.4510 0.021 5eix:G, 7lhz:D
8 7lhz:C 714 58 0.1456 0.0322 0.3966 0.64 5eix:A, 5eix:B, 7lhz:A, 6waa:B, 6waa:F
9 7lhz:B 631 38 0.1013 0.0254 0.4211 0.93
10 2eh6:A 375 30 0.0633 0.0267 0.3333 2.0 2eh6:B
11 6waa:H 656 19 0.0759 0.0183 0.6316 3.1 6waa:D
12 7k3u:A 362 21 0.0696 0.0304 0.5238 3.1 7k3u:B, 7k3u:C, 7k3u:D, 7k3u:E, 7k3u:F, 7k3u:G, 7k3u:H, 7k3u:I, 7k3u:J, 7n02:A, 7n02:B, 6xmr:A, 6xmr:B, 4zng:C, 4zng:B, 4zng:A
13 5vpw:C 495 37 0.0759 0.0242 0.3243 4.5
14 1mio:A 525 37 0.0759 0.0229 0.3243 4.6 1mio:C, 5vpw:A, 5vq3:A, 5vq3:C, 4wes:A, 4wes:C, 4wn9:A, 4wn9:C
15 2ahr:E 259 71 0.1329 0.0811 0.2958 4.7 2ahr:A, 2ahr:D, 2ahr:B, 2ahr:C, 2amf:D, 2amf:A, 2amf:B, 2amf:C, 2amf:E
16 3j8h:A 3660 46 0.1076 0.0046 0.3696 6.8 3j8h:C, 3j8h:E, 3j8h:G
17 5gky:A 3660 46 0.1076 0.0046 0.3696 6.8 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
18 1ps9:A 671 43 0.1139 0.0268 0.4186 8.1
19 4o5t:B 326 30 0.0823 0.0399 0.4333 9.9 4o5t:A, 7zp7:A, 7zp7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218