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BioLiP
>protein
SSEYIVEKFLGKRYLRGRPQYLTKWEGYPIEQCTWEPLENLGKCMTLIADYEAELFQQSRE

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vrf:A 61 61 1.0000 1.0000 1.0000 6.17e-41 7vrf:B
2 4u68:A 64 59 0.5738 0.5469 0.5932 2.13e-25 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
3 6asz:A 53 51 0.3934 0.4528 0.4706 7.42e-10 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
4 2rvn:A 83 48 0.3607 0.2651 0.4583 7.43e-10
5 3tzd:A 58 50 0.3443 0.3621 0.4200 1.70e-08 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
6 1guw:A 73 42 0.3279 0.2740 0.4762 3.12e-08 6d07:A, 6d07:B, 6d08:A, 6d08:B
7 8uxq:A 170 46 0.3443 0.1235 0.4565 3.54e-08 3fdt:A
8 6v41:AAA 61 52 0.3279 0.3279 0.3846 8.69e-08
9 7vyw:A 47 38 0.3279 0.4255 0.5263 8.85e-08
10 7n27:A 57 49 0.3279 0.3509 0.4082 1.33e-07 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
11 3gv6:A 56 49 0.3279 0.3571 0.4082 1.60e-07 3i90:A, 3i90:B
12 5eq0:A 55 51 0.3279 0.3636 0.3922 1.37e-06 3i91:A
13 5epl:B 58 46 0.3279 0.3448 0.4348 2.49e-06 5epl:A
14 5ejw:A 80 51 0.3115 0.2375 0.3725 5.33e-06 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
15 5epk:A 54 46 0.2787 0.3148 0.3696 1.77e-05 3h91:A, 3h91:B
16 6v2d:G 64 51 0.2951 0.2812 0.3529 5.67e-05 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
17 7ubu:A 708 57 0.3279 0.0282 0.3509 1.04e-04 4ft4:A, 4ft4:B
18 4fsx:A 680 57 0.3279 0.0294 0.3509 1.09e-04 4fsx:B, 4ft2:B, 4ft2:A
19 3qo2:A 61 54 0.2459 0.2459 0.2778 7.04e-04 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
20 1pfb:A 55 38 0.2459 0.2727 0.3947 0.002 1pdq:A
21 2rsn:A 75 39 0.2787 0.2267 0.4359 0.010 3g7l:A
22 6guu:B 204 33 0.1967 0.0588 0.3636 0.071 6guu:A
23 2b2w:A 177 20 0.1639 0.0565 0.5000 0.078 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
24 2b2w:A 177 25 0.1967 0.0678 0.4800 1.7 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
25 1gl9:B 1020 42 0.2295 0.0137 0.3333 0.13 1gl9:C
26 8rv0:Y 495 38 0.2131 0.0263 0.3421 0.17 8rvm:YYY, 8rxu:AAA, 8rxu:MMM, 8rxu:YYY
27 4d90:A 127 26 0.1803 0.0866 0.4231 0.20 4d90:B
28 6ryr:W 708 44 0.2623 0.0226 0.3636 0.23 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
29 6q3m:C 219 44 0.2623 0.0731 0.3636 1.1 6q3m:A, 6q3m:B
30 6q3m:C 219 23 0.1639 0.0457 0.4348 6.4 6q3m:A, 6q3m:B
31 3uyt:D 268 39 0.2295 0.0522 0.3590 1.7 4kb8:A, 4kba:A
32 5l0t:B 40 24 0.1148 0.1750 0.2917 3.9 5ky7:B, 5l0u:B, 5l0v:B
33 6s47:Bi 952 36 0.1639 0.0105 0.2778 6.4
34 7w7g:A 1528 25 0.1311 0.0052 0.3200 8.1
35 4d0f:A 125 30 0.1311 0.0640 0.2667 9.0 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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