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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEA

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i0r:v 173 75 1.0000 0.4335 1.0000 1.62e-51 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
2 8ch6:I 185 72 0.8800 0.3568 0.9167 4.03e-43 7abi:F, 7onb:M, 7qtt:I, 5z56:v, 5z57:v
3 5nrl:U 196 47 0.2800 0.1071 0.4468 1.24e-07
4 7dco:v 207 47 0.2800 0.1014 0.4468 1.24e-07 5gm6:I, 5zwm:v, 5zwo:v
5 6g90:U 196 47 0.2800 0.1071 0.4468 1.28e-07 7oqb:U, 7oqe:U
6 8qzs:r 114 36 0.1733 0.1140 0.3611 0.002 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
7 8idf:A 459 40 0.2000 0.0327 0.3750 0.015
8 8pv1:Cb 101 32 0.1600 0.1188 0.3750 0.81 8pv2:Cb, 8pv3:Cb, 8pv4:Cb, 8pv5:Cb, 8pv6:Cb, 8pv7:Cb, 8pv8:Cb, 8pvk:Cb, 8pvl:Cb
9 1zu1:A 127 33 0.1600 0.0945 0.3636 1.5
10 1xed:A 111 40 0.1600 0.1081 0.3000 1.7 1xed:B
11 3taz:B 433 51 0.2000 0.0346 0.2941 3.6 3tal:A, 3tal:B, 3taz:A
12 8ost:A 390 33 0.1600 0.0308 0.3636 3.7
13 6jmt:D 350 38 0.1200 0.0257 0.2368 4.2 6jmt:C, 6jmt:E, 6jmt:F, 6jmt:A, 6jmt:B
14 6iw6:A 438 33 0.1600 0.0274 0.3636 4.6 6iw6:B
15 8q7n:X 81 33 0.1467 0.1358 0.3333 6.1 8h6k:4I, 8h6l:4I, 8qo9:X, 8qpe:X, 8qzs:X
16 1deh:A 374 19 0.1200 0.0241 0.4737 6.5 1deh:B, 1hdx:A, 1hdx:B, 1hdy:A, 1hdy:B, 1hdz:A, 1hdz:B, 1hso:A, 1hso:B, 1hsz:A, 1hsz:B, 1ht0:A, 1ht0:B, 1htb:A, 1htb:B, 3hud:A, 3hud:B, 1u3t:A, 1u3t:B, 1u3u:A, 1u3u:B, 1u3v:A, 1u3v:B, 1u3w:A, 1u3w:B
17 6hqd:C 415 30 0.1600 0.0289 0.4000 7.3 6hqd:A, 6hqd:B
18 2ebv:A 57 20 0.1067 0.1404 0.4000 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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